On routing two-point nets across a channel. - Ron Y. Pinter (DAC, 1982)

An Algorithm for the Optimal Placement and Routing of a Circuit within a Ring of Pads (Extended Abstract) - Brenda S. Baker; Ron Y. Pinter (FOCS, 1983)

Optimal Placement for River Routing. - Charles E. Leiserson; Ron Y. Pinter (SIAM J. Comput., 1983)

Optimum scan-width selection under containment constraints. - Michael R. Garey; Ron Y. Pinter (AT&T Bell Lab. Tech. J., 1984)

Optimal Scheduling of Arithmetic Operations in Parallel with Memory Accesses. - David Bernstein; Ron Y. Pinter; Michael Rodeh (POPL, 1985)

An environment for logic programming. - Nissim Francez; Shalom Goldenberg; Ron Y. Pinter; Michael L. Tiomkin; Shalom Tsur (SLIPE, 1985)

Polygon Triangulation: Efficiency and Minimality. - Takao Asano; Tetsuo Asano; Ron Y. Pinter (J. Algorithms, 1986)

Optimal Chaining of CMOS Transistors in a Functional Cell. - Shmuel Wimer; Ron Y. Pinter; Jack A. Feldman (IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 1987)

Trapezoid graphs and their coloring. - Ido Dagan; Martin Charles Golumbic; Ron Y. Pinter (Discret. Appl. Math., 1988)

Optimal Chaining in Expression Trees. - David Bernstein; Haran Boral; Ron Y. Pinter (IEEE Trans. Computers, 1988)

Spill Code Minimization Techniques for Optimizing Compilers. - David Bernstein; Dina Q. Goldin; Martin Charles Golumbic; Hugo Krawczyk; Yishay Mansour; Itai Nahshon; Ron Y. Pinter (PLDI, 1989)

Feed-through river routing. - Amnon Joseph; Ron Y. Pinter (Integr., 1989)

Depth-first-search and dynamic programming algorithms for efficient CMOS cell generation. - Reuven Bar-Yehuda; Jack A. Feldman; Ron Y. Pinter; Shmuel Wimer (IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 1989)

The parallel C (pC) programming language. - Ran Canetti; L. Paul Fertig; Saul A. Kravitz; Dalia Malki; Ron Y. Pinter; Sara Porat; Avi Teperman (IBM J. Res. Dev., 1991)

Partial Compilation of REXX. - Ron Y. Pinter; Pnina Vortman; Zvi Weiss (IBM Syst. J., 1991)

An array language for data parallelism: Definition, compilation, and applications. - Luis F. Ortiz; Ron Y. Pinter; Shlomit S. Pinter (J. Supercomput., 1991)

Realizing expression graphs using table-lookup FPGAs. - Ilan Levin; Ron Y. Pinter (EURO-DAC, 1993)

Minimizing Channel Density by Lateral Shifting of Components. - David S. Johnson 001; Andrea S. LaPaugh; Ron Y. Pinter (SODA, 1994)

Program Optimization and Parallelization Using Idioms. - Shlomit S. Pinter; Ron Y. Pinter (ACM Trans. Program. Lang. Syst., 1994)

jCentral: Search the Web for Java. - Reiner Kraft; Gabi Zodik; Daniel Alexander Ford; Ron Y. Pinter; Dirk Nicol; Qi Lu; Matthias Eichstaedt (WebNet, 1999)

Sorting by Length-Weighted Reversals: Dealing with Signs and Circularity. - Firas Swidan; Michael A. Bender; Dongdong Ge; Simai He; Haodong Hu; Ron Y. Pinter (CPM, 2004)

On the number of rectangular partitions. - Eyal Ackerman; Gill Barequet; Ron Y. Pinter (SODA, 2004)

Improved bounds on sorting with length-weighted reversals. - Michael A. Bender; Dongdong Ge; Simai He; Haodong Hu; Ron Y. Pinter; Steven Skiena; Firas Swidan (SODA, 2004)

An Upper Bound on the Number of Rectangulations of a Point Set. - Eyal Ackerman; Gill Barequet; Ron Y. Pinter (COCOON, 2005)

Dotted interval graphs and high throughput genotyping. - Yonatan Aumann; Moshe Lewenstein; Oren Melamud; Ron Y. Pinter; Zohar Yakhini (SODA, 2005)

HyperFlow: An Integrated Visual Query and Dataflow Language for End-User Information Analysis. - Dolev Dotan; Ron Y. Pinter (VL/HCC, 2005)

Alignment of metabolic pathways. - Ron Y. Pinter; Oleg Rokhlenko; Esti Yeger Lotem; Michal Ziv-Ukelson (Bioinform., 2005)

Flux-Based vs. Topology-Based Similarity of Metabolic Genes. - Oleg Rokhlenko; Tomer Shlomi; Roded Sharan; Eytan Ruppin; Ron Y. Pinter (WABI, 2006)

A bijection between permutations and floorplans, and its applications. - Eyal Ackerman; Gill Barequet; Ron Y. Pinter (Discret. Appl. Math., 2006)

The number of guillotine partitions in d dimensions. - Eyal Ackerman; Gill Barequet; Ron Y. Pinter; Dan Romik (Inf. Process. Lett., 2006)

On the Repeat-Annotated Phylogenetic Tree Reconstruction Problem. - Firas Swidan; Michal Ziv-Ukelson; Ron Y. Pinter (J. Comput. Biol., 2006)

A High-Throughput Approach for Associating MicroRNAs with Their Activity Conditions. - Chaya Ben-Zaken Zilberstein; Michal Ziv-Ukelson; Ron Y. Pinter; Zohar Yakhini (J. Comput. Biol., 2006)

On the number of rectangulations of a planar point set. - Eyal Ackerman; Gill Barequet; Ron Y. Pinter (J. Comb. Theory A, 2006)

An Integrative Method for Accurate Comparative Genome Mapping. - Firas Swidan; Eduardo P. C. Rocha; Michael Shmoish; Ron Y. Pinter (PLoS Comput. Biol., 2006)

Seeded Tree Alignment and Planar Tanglegram Layout. - Antoni Lozano; Ron Y. Pinter; Oleg Rokhlenko; Gabriel Valiente; Michal Ziv-Ukelson (WABI, 2007)

Constraint-based functional similarity of metabolic genes: going beyond network topology. - Oleg Rokhlenko; Tomer Shlomi; Roded Sharan; Eytan Ruppin; Ron Y. Pinter (Bioinform., 2007)

Improved bounds on sorting by length-weighted reversals. - Michael A. Bender; Dongdong Ge; Simai He; Haodong Hu; Ron Y. Pinter; Steven Skiena; Firas Swidan (J. Comput. Syst. Sci., 2008)

Intersection representations of matrices by subtrees and unicycles on graphs. - Fanica Gavril; Ron Y. Pinter; Shmuel Zaks (J. Discrete Algorithms, 2008)

Approximate labelled subtree homeomorphism. - Ron Y. Pinter; Oleg Rokhlenko; Dekel Tsur; Michal Ziv-Ukelson (J. Discrete Algorithms, 2008)

Seeded Tree Alignment. - Antoni Lozano; Ron Y. Pinter; Oleg Rokhlenko; Gabriel Valiente; Michal Ziv-Ukelson (IEEE ACM Trans. Comput. Biol. Bioinform., 2008)

A Statistical Framework for the Functional Analysis of Metagenomes. - Itai Sharon; Amrita Pati; Victor M. Markowitz; Ron Y. Pinter (RECOMB, 2009)

Comparative classification of species and the study of pathway evolution based on the alignment of metabolic pathways. - Adi Mano; Tamir Tuller; Oded Béjà; Ron Y. Pinter (BMC Bioinform., 2010)

Pathway-Based Functional Analysis of Metagenomes. - Itai Sharon; Sivan Bercovici; Ron Y. Pinter; Tomer Shlomi (J. Comput. Biol., 2011)

Dotted interval graphs. - Yonatan Aumann; Moshe Lewenstein; Oren Melamud; Ron Y. Pinter; Zohar Yakhini (ACM Trans. Algorithms, 2012)

Partial Information Network Queries. - Ron Y. Pinter; Meirav Zehavi (IWOCA, 2013)

Orders Induced by Segments in Floorplans and (2 - 14 - 3, 3 - 41 - 2)-Avoiding Permutations. - Andrei Asinowski; Gill Barequet; Mireille Bousquet-Mélou; Toufik Mansour; Ron Y. Pinter (Electron. J. Comb., 2013)

Cut equivalence of d-dimensional guillotine partitions. - Andrei Asinowski; Gill Barequet; Toufik Mansour; Ron Y. Pinter (Discret. Math., 2014)

Cell-based interconnect migration by hierarchical optimization. - Eugene Shaphir; Ron Y. Pinter; Shmuel Wimer (Integr., 2014)

Algorithms for topology-free and alignment network queries. - Ron Y. Pinter; Meirav Zehavi (J. Discrete Algorithms, 2014)

Partial Information Network Queries. - Ron Y. Pinter; Hadas Shachnai; Meirav Zehavi (J. Discrete Algorithms, 2015)

Deterministic parameterized algorithms for the Graph Motif problem. - Ron Y. Pinter; Hadas Shachnai; Meirav Zehavi (Discret. Appl. Math., 2016)

Improved Parameterized Algorithms for Network Query Problems. - Ron Y. Pinter; Hadas Shachnai; Meirav Zehavi (Algorithmica, 2019)

A Note on GRegNetSim: A Tool for the Discrete Simulation and Analysis of Genetic Regulatory Networks. - Dor Ganor; Ron Y. Pinter; Meirav Zehavi (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)