Toward a Human Genome Encyclopedia. - Kaoru Yoshida; Cassandra Smith; Toni Kazic; George Michaels; Ronald C. Taylor; David Zawada; Ray Hagstrom; Ross A. Overbeek (FGCS, 1992)

Searching for Genomic Organizational Motifs: Explorations of the Escherichia Coli Chromosome. - George S. Michaels; Ronald C. Taylor; Ray Hagstrom; Morgan Price; Ross A. Overbeek (Comput. Chem., 1993)

GEST: a gene expression search tool based on a novel Bayesian similarity metric. - Lawrence Hunter; Ronald C. Taylor; Sonia M. Leach; Richard Simon (ISMB (Supplement of Bioinformatics), 2001)

An open letter to the scientific journals. - Catherine A. Ball; Gavin Sherlock; Helen E. Parkinson; Philippe Rocca-Serra; Catherine Brooksbank; Helen C. Causton; Duccio Cavalieri; Terry Gaasterland; Pascal Hingamp; Frank C. P. Holstege; Martin Ringwald; Paul T. Spellman; et al. (Bioinform., 2002)

A bioinformatics tool to select sequences for microarray studies of mouse models of oncogenesis. - Mary E. Edgerton; Ronald C. Taylor; John I. Powell; Lawrence Hunter; Richard Simon; Edison T. Liu (Bioinform., 2002)

SEBINI: Software Environment for BIological Network Inference. - Ronald C. Taylor; Anuj Shah; Charles Treatman; Meridith Blevins (Bioinform., 2006)

SEBINI-CABIN: An Analysis Pipeline for Biological Network Inference, with a Case Study in Protein-Protein Interaction Network Reconstruction. - Ronald C. Taylor; Mudita Singhal; Don Simone Daly; Kelly Domico; Amanda M. White; Deanna L. Auberry; Kenneth J. Auberry; Brian Hooker; Gregory B. Hurst; Jason E. McDermott; W. Hayes McDonald; Dale Pelletier; et al. (ICMLA, 2007)

Gene set analyses for interpreting microarray experiments on prokaryotic organisms. - Nathan L. Tintle; Aaron A. Best; Matthew DeJongh; Dirk Van Bruggen; Fred Heffron; Steffen Porwollik; Ronald C. Taylor (BMC Bioinform., 2008)

Network Inference Algorithms Elucidate Nrf2 Regulation of Mouse Lung Oxidative Stress. - Ronald C. Taylor; George K. Acquaah-Mensah; Mudita Singhal; Deepti Malhotra; Shyam Biswal (PLoS Comput. Biol., 2008)

Using the gene ontology to enrich biological pathways. - Antonio Sanfilippo; Bob Baddeley; Nathaniel Beagley; Jason E. McDermott; Roderick M. Riensche; Ronald C. Taylor; Banu Gopalan (Int. J. Comput. Biol. Drug Des., 2009)

An analysis pipeline for the inference of protein-protein interaction networks. - Ronald C. Taylor; Mudita Singhal; Don Simone Daly; Jason M. Gilmore; William R. Cannon; Kelly Domico; Amanda M. White; Deanna L. Auberry; Kenneth J. Auberry; Brian Hooker; Gregory B. Hurst; Jason E. McDermott; et al. (Int. J. Data Min. Bioinform., 2009)

Bottlenecks and Hubs in Inferred Networks Are Important for Virulence in Salmonella typhimurium. - Jason E. McDermott; Ronald C. Taylor; Hyunjin Yoon; Fred Heffron (J. Comput. Biol., 2009)

An integrated approach to predictive genomic analytics. - Jason E. McDermott; Bob Baddeley; Susan L. Stevens; Antonio Sanfilippo; Rick Riensche; Mary P. Stenzel-Poore; Ronald C. Taylor; Russ Jensen (BCB, 2010)

Learning biological networks via bootstrapping with optimized go-based gene similarity. - Ronald C. Taylor; Bob Baddeley; Antonio Sanfilippo; Rick Riensche; Marc Verhagen; Jason E. McDermott; Russ Jensen (BCB, 2010)

An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics. - Ronald C. Taylor (BMC Bioinform., 2010)

Modular Semantic Tagging of Medline Abstracts and Its Use in Inferring Regulatory Networks. - Marc Verhagen; James Pustejovsky; Ronald C. Taylor; Antonio Sanfilippo (ICSC, 2011)

Enriching regulatory networks by bootstrap learning using optimised GO-based gene similarity and gene links mined from PubMed abstracts. - Ronald C. Taylor; Antonio Sanfilippo; Jason E. McDermott; Bob Baddeley; Roderick M. Riensche; Russ Jensen; Marc Verhagen; James Pustejovsky (Int. J. Comput. Biol. Drug Des., 2011)

Modeling Dynamic Regulatory Processes in Stroke. - Jason E. McDermott; Kenneth D. Jarman; Ronald C. Taylor; Mary J. Lancaster; Harish Shankaran; Keri B. Vartanian; Susan L. Stevens; Mary P. Stenzel-Poore; Antonio Sanfilippo (PLoS Comput. Biol., 2012)

Special Issue for Emerging Computational Methods for the Life Sciences Workshop. - Judy Qiu; Ian T. Foster; Ronald C. Taylor (Concurr. Comput. Pract. Exp., 2014)

Modeling framework for isotopic labeling of heteronuclear moieties. - Mark I. Borkum; Patrick Reardon; Ronald C. Taylor; Nancy G. Isern (J. Cheminformatics, 2017)