MimoSA: a system for minimotif annotation. - Jay Vyas; Ronald J. Nowling; Thomas Meusburger; David P. Sargeant; Krishna Kadaveru; Michael R. Gryk; Vamsi Kundeti; Sanguthevar Rajasekaran; Martin R. Schiller (BMC Bioinform., 2010)

Iterative Development of an Application to Support Nuclear Magnetic Resonance Data Analysis of Proteins. - Heidi J. C. Ellis; Ronald J. Nowling; Jay Vyas; Timothy O. Martyn; Michael R. Gryk (ITNG, 2011)

Priority Encoding Scheme for Solving Permutation and Constraint Problems with Genetic Algorithms and Simulated Annealing. - Ronald J. Nowling; Holger Mauch (ITNG, 2011)

A Pipeline Software Architecture for NMR Spectrum Data Translation. - Heidi J. C. Ellis; Gerard Weatherby; Ronald J. Nowling; Jay Vyas; Matt Fenwick; Michael R. Gryk (Comput. Sci. Eng., 2013)

A Domain-Driven, Generative Data Model for Big Pet Store. - Ronald J. Nowling; Jay Vyas (BDCloud, 2014)

Stable feature ranking with logistic regression ensembles. - Ronald J. Nowling; Scott J. Emrich (BIBM, 2017)

Detecting Chromosomal Inversions from Dense SNPs by Combining PCA and Association Tests. - Ronald J. Nowling; Scott J. Emrich (BCB, 2018)

Adjusted likelihood-ratio test for variants with unknown genotypes. - Ronald J. Nowling; Scott J. Emrich (J. Bioinform. Comput. Biol., 2018)

Classification before Segmentation: Improved U-Net Prostate Segmentation. - Ronald J. Nowling; John Bukowy; Sean D. McGarry; Andrew S. Nencka; Oliver Blasko; Jay Urbain; Allison K. Lowman; Alexander Barrington; Anjishnu Banerjee; Kenneth A. Iczkowski; Peter S. LaViolette (BHI, 2019)

PeakMatcher: Matching Peaks Across Genome Assemblies. - Ronald J. Nowling; Christopher R. Beal; Scott J. Emrich; Susanta K. Behura; Marc S. Halfon; Molly Duman-Scheel (BCB, 2020)

Filtering STARR-Seq Peaks for Enhancers with Sequence Models. - Ronald J. Nowling; Rafael Reple Geromel; Benjamin Halligan (BCB, 2020)

Sequence model evaluation framework for STARR-seq peak calling. - Christopher R. Beal; John G. Peters; Ronald J. Nowling (BCB, 2021)

Segmenting and Genotyping Large, Polymorphic Inversions. - Ronald J. Nowling; Samuel H. Keyser; Alex R. Moran; John G. Peters; Daniel Leskiewicz (eIT, 2023)

ML Production Systems Course at a Polytechnic PUI. - Ronald J. Nowling (J. Comput. Sci. Coll., 2023)

Experience Report from a Graduate ML Production Systems Course. - Ronald J. Nowling (EIT, 2024)