FunMap: functional mapping of complex traits. - Chang-Xing Ma; Rongling Wu; George Casella (Bioinform., 2004)

A Mixed Polyploid Model for Linkage Analysis in Outcrossing Tetraploids Using a Pseudo-Test Backcross Design. - Rongling Wu; Chang-Xing Ma; George Casella (J. Comput. Biol., 2004)

Mapping genome-genome epistasis: a high-dimensional model. - Yuehua Cui; Rongling Wu (Bioinform., 2005)

A non-stationary model for functional mapping of complex traits. - Wei Zhao; Ying Q. Chen; George Casella; James M. Cheverud; Rongling Wu (Bioinform., 2005)

A Bivariate Functional Mapping Model for Identifying Haplotypes that Control Drug Response for Systolic and Diastolic Blood Pressures. - Min Lin; Rongling Wu; Julie A. Johnson (Pacific Symposium on Biocomputing, 2006)

A joint model for nonparametric functional mapping of longitudinal trajectory and time-to-event. - Min Lin; Rongling Wu (BMC Bioinform., 2006)

Semiparametric functional mapping of quantitative trait loci governing long-term HIV dynamics. - Song Wu; Jie Yang 063; Rongling Wu (ISMB/ECCB (Supplement of Bioinformatics), 2007)

Modeling sequence-sequence interactions for drug response. - Min Lin; Hongying Li; Wei Hou; Julie A. Johnson; Rongling Wu (Bioinform., 2007)

Integration of Functional Mapping and Delay Differential Equations to Map the Genes that Regulate Circadian Rhythms. - Yunmei Chen; Guifang Fu; Rongling Wu (BCBGC, 2008)

A Bayesian Algorithm for Functional Mapping of Dynamic Complex Traits. - Tian Liu; Rongling Wu (Algorithms, 2009)

Modeling genetic imprinting effects of DNA sequences with multilocus polymorphism data. - Sheron Wen; Chenguang Wang; Arthur Berg; Yao Li; Myron M. Chang; Roger B. Fillingim; Margaret R. Wallace; Roland Staud; Lee Kaplan; Rongling Wu (Algorithms Mol. Biol., 2009)

Wavelet-Based Functional Clustering for Patterns of High-Dimensional Dynamic Gene Expression. - Bong-Rae Kim; Timothy McMurry; Wei Zhao; Rongling Wu; Arthur Berg (J. Comput. Biol., 2010)

The Bayesian lasso for genome-wide association studies. - Jiahan Li; Kiranmoy Das; Guifang Fu; Runze Li 001; Rongling Wu (Bioinform., 2011)

3FunMap: full-sib family functional mapping of dynamic traits. - Chunfa Tong; Zhong Wang 001; Bo Zhang; Jisen Shi; Rongling Wu (Bioinform., 2011)

Systems mapping: how to improve the genetic mapping of complex traits through design principles of biological systems. - Rongling Wu; Jiguo Cao; Zhongwen Huang; Zhong Wang 001; Junyi Gai; C. Eduardo Vallejos (BMC Syst. Biol., 2011)

A computational framework for the inheritance pattern of genomic imprinting for complex traits. - Chenguang Wang; Zhong Wang 001; Daniel R. Prows; Rongling Wu (Briefings Bioinform., 2012)

How to cluster gene expression dynamics in response to environmental signals. - Yakun Wang; Meng Xu; Zhong Wang 001; Ming Tao; Junjia Zhu; Li Wang 021; Runze Li 001; Scott A. Berceli; Rongling Wu (Briefings Bioinform., 2012)

Functional mapping of ontogeny in flowering plants. - Xiyang Zhao; Chunfa Tong; Xiaoming Pang; Zhong Wang 001; Yunqian Guo; Fang Du; Rongling Wu (Briefings Bioinform., 2012)

A quantitative genetic and epigenetic model of complex traits. - Zhong Wang 001; Zuoheng Wang; Jianxin Wang 004; Yihan Sui; Jian Zhang; Duanping Liao; Rongling Wu (BMC Bioinform., 2012)

A multivalent three-point linkage analysis model of autotetraploids. - Yafei Lv; Xiaoxia Yang; Chunfa Tong; Xin Li 025; Sisi Feng; Zhong Wang 001; Xiaoming Pang; Yaqun Wang; Ningtao Wang; Christian M. Tobias; Rongling Wu (Briefings Bioinform., 2013)

A statistical procedure to map high-order epistasis for complex traits. - Xiaoming Pang; Zhong Wang 001; John S. Yap; Jianxin Wang 004; Junjia Zhu; Wenhao Bo; Yafei Lv; Fang Xu; Tao Zhou; Shaofeng Peng; Dengfeng Shen; Rongling Wu (Briefings Bioinform., 2013)

A dynamic framework for quantifying the genetic architecture of phenotypic plasticity. - Zhong Wang 001; Xiaoming Pang; Yafei Lv; Fang Xu; Tao Zhou; Xin Li 025; Sisi Feng; Jiahan Li; Zhikang Li; Rongling Wu (Briefings Bioinform., 2013)

A unifying framework for bivalent multilocus linkage analysis of allotetraploids. - Xiaoxia Yang; Yafei Lv; Xiaoming Pang; Chunfa Tong; Zhong Wang 001; Xin Li 025; Sisi Feng; Christian M. Tobias; Rongling Wu (Briefings Bioinform., 2013)

A quantitative model of transcriptional differentiation driving host-pathogen interactions. - Sheng Zhu; Zhong Wang 001; Jianxin Wang 004; Yaqun Wang; Ningtao Wang; Zuoheng Wang; Meng Xu; Xiaohua Su; Mingxiu Wang; Shougong Zhang; Minren Huang; Rongling Wu (Briefings Bioinform., 2013)

PFGD: A systematic functional genomics resource for Poplar. - Jingna Si; Jin Cheng; Rongling Wu (BIBM, 2014)

Systems mapping: how to map genes for biomass allocation toward an ideotype. - Wenhao Bo; Guifang Fu; Zhong Wang 001; Fang Xu; Yong Shen; Jichen Xu; Zhongwen Huang; Junyi Gai; C. Eduardo Vallejos; Rongling Wu (Briefings Bioinform., 2014)

Shape mapping: genetic mapping meets geometric morphometrics. - Wenhao Bo; Zhong Wang 001; Fang Xu; Guifang Fu; Yihan Sui; Weimiao Wu; Xuli Zhu; Danni Yin; Qin Yan; Rongling Wu (Briefings Bioinform., 2014)

An allometric model for mapping seed development in plants. - Zhongwen Huang; Chunfa Tong; Wenhao Bo; Xiaoming Pang; Zhong Wang 001; Jichen Xu; Junyi Gai; Rongling Wu (Briefings Bioinform., 2014)

A model-free approach for detecting interactions in genetic association studies. - Jiahan Li; Jun Dan; Chunlei Li 006; Rongling Wu (Briefings Bioinform., 2014)

A model for family-based case-control studies of genetic imprinting and epistasis. - Xin Li 025; Yihan Sui; Tian Liu; Jianxin Wang 004; Yongci Li; Zhenwu Lin; John Hegarty; Walter A. Koltun; Zuoheng Wang; Rongling Wu (Briefings Bioinform., 2014)

A case-control design for testing and estimating epigenetic effects on complex diseases. - Yihan Sui; Weimiao Wu; Zhong Wang 001; Jianxin Wang 004; Zuoheng Wang; Rongling Wu (Briefings Bioinform., 2014)

Structural mapping: how to study the genetic architecture of a phenotypic trait through its formation mechanism. - Chunfa Tong; Lianying Shen; Yafei Lv; Zhong Wang 001; Xiaoling Wang; Sisi Feng; Xin Li 025; Yihan Sui; Xiaoming Pang; Rongling Wu (Briefings Bioinform., 2014)

A bi-Poisson model for clustering gene expression profiles by RNA-seq. - Ningtao Wang; Yaqun Wang; Han Hao; Luojun Wang; Zhong Wang 001; Jianxin Wang 004; Rongling Wu (Briefings Bioinform., 2014)

Towards a comprehensive picture of the genetic landscape of complex traits. - Zhong Wang 001; Yaqun Wang; Ningtao Wang; Jianxin Wang 004; Zuoheng Wang; C. Eduardo Vallejos; Rongling Wu (Briefings Bioinform., 2014)

A statistical model for QTL mapping in polysomic autotetraploids underlying double reduction. - Fang Xu; Yafei Lyu; Chunfa Tong; Weimiao Wu; Xuli Zhu; Danni Yin; Qin Yan; Jian Zhang; Xiaoming Pang; Christian M. Tobias; Rongling Wu (Briefings Bioinform., 2014)

A statistical design for testing apomictic diversification through linkage analysis. - Yanru Zeng; Wei Hou; Shuang Song; Sisi Feng; Lin Shen; Guohua Xia; Rongling Wu (Briefings Bioinform., 2014)

2HiGWAS: a unifying high-dimensional platform to infer the global genetic architecture of trait development. - Libo Jiang; Jingyuan Liu; Xuli Zhu; Meixia Ye; Lidan Sun; Xavier Lacaze; Rongling Wu (Briefings Bioinform., 2015)

An open-pollinated design for mapping imprinting genes in natural populations. - Lidan Sun; Xuli Zhu; Wenhao Bo; Fang Xu; Tangren Cheng; Qixiang Zhang; Rongling Wu (Briefings Bioinform., 2015)

Allotetraploid and autotetraploid models of linkage analysis. - Fang Xu; Chunfa Tong; Yafei Lyu; Wenhao Bo; Xiaoming Pang; Rongling Wu (Briefings Bioinform., 2015)

Functional mapping of seasonal transition in perennial plants. - Meixia Ye; Libo Jiang; Ke Mao; Yaqun Wang; Zhong Wang 001; Rongling Wu (Briefings Bioinform., 2015)

A multi-Poisson dynamic mixture model to cluster developmental patterns of gene expression by RNA-seq. - Meixia Ye; Zhong Wang 001; Yaqun Wang; Rongling Wu (Briefings Bioinform., 2015)

A QTL model to map the common genetic basis for correlative phenotypic plasticity. - Tao Zhou; Yafei Lyu; Fang Xu; Wenhao Bo; Yi Zhai; Jian Zhang; Xiaoming Pang; Bingsong Zheng; Rongling Wu (Briefings Bioinform., 2015)

iFORM/eQTL: an ultrahigh-dimensional platform for inferring the global genetic architecture of gene transcripts. - Kirk Gosik; Lan Kong; Vernon M. Chinchilli; Rongling Wu (Briefings Bioinform., 2017)

Evo-Devo-EpiR: a genome-wide search platform for epistatic control on the evolution of development. - Libo Jiang; Miaomiao Zhang; Mengmeng Sang; Meixia Ye; Rongling Wu (Briefings Bioinform., 2017)

A high-dimensional linkage analysis model for characterizing crossover interference. - Jing Wang 142; Lidan Sun; Libo Jiang; Mengmeng Sang; Meixia Ye; Tangran Cheng; Qixiang Zhang; Rongling Wu (Briefings Bioinform., 2017)

A computing platform to map ecological metabolism by integrating functional mapping and the metabolic theory of ecology. - Qin Yan; Xuli Zhu; Libo Jiang; Meixia Ye; Lidan Sun; John S. Terblanche; Rongling Wu (Briefings Bioinform., 2017)

AlloMap6: an R package for genetic linkage analysis in allohexaploids. - Xuli Zhu; Huan Li; Meixia Ye; Libo Jiang; Mengmeng Sang; Rongling Wu (Briefings Bioinform., 2017)

Mapping morphological shape as a high-dimensional functional curve. - Guifang Fu; Mian Huang; Wenhao Bo; Han Hao; Rongling Wu (Briefings Bioinform., 2018)

How trees allocate carbon for optimal growth: insight from a game-theoretic model. - Liyong Fu; Lidan Sun; Han Hao; Libo Jiang; Sheng Zhu; Meixia Ye; Shouzheng Tang; Minren Huang; Rongling Wu (Briefings Bioinform., 2018)

The genetic architecture of heterochrony as a quantitative trait: lessons from a computational model. - Lidan Sun; Mengmeng Sang; Chenfei Zheng; Dongyang Wang; Hexin Shi; Kaiyue Liu; Yanfang Guo; Tangren Cheng; Qixiang Zhang; Rongling Wu (Briefings Bioinform., 2018)

HpQTL: a geometric morphometric platform to compute the genetic architecture of heterophylly. - Lidan Sun; Jing Wang 142; Xuli Zhu; Libo Jiang; Kirk Gosik; Mengmeng Sang; Fengsuo Sun; Tangren Cheng; Qixiang Zhang; Rongling Wu (Briefings Bioinform., 2018)

Methodological implementation of mixed linear models in multi-locus genome-wide association studies. - Yang-Jun Wen; Hanwen Zhang; Yuan-Li Ni; Bo Huang; Jin Zhang; Jian-Ying Feng; Shibo Wang; Jim M. Dunwell; Yuan-Ming Zhang; Rongling Wu (Briefings Bioinform., 2018)

HiGwas: how to compute longitudinal GWAS data in population designs. - Zhong Wang 001; Nating Wang; Zilu Wang; Libo Jiang; Yaqun Wang; Jiahan Li; Rongling Wu; Janet Kelso (Bioinform., 2020)

Prioritizing genetic variants in GWAS with lasso using permutation-assisted tuning. - Songshan Yang; Jiawei Wen; Scott T. Eckert; Yaqun Wang; Dajiang J. Liu; Rongling Wu; Runze Li 001; Xiang Zhan (Bioinform., 2020)

A statistical framework for recovering pseudo-dynamic networks from static data. - Chixiang Chen; Biyi Shen; Tianzhou Ma; Ming Wang; Rongling Wu (Bioinform., 2022)

Estimating unknown parameters in differential equations with a reinforcement learning based PSO method. - Wenkui Sun; Xiaoya Fan; Lijuan Jia; Tinyi Chu; Shing-Tung Yau; Rongling Wu; Zhong Wang 001 (CoRR, 2024)