Mining Clickstream-Based Data Cubes. - Ronnie Alves; Orlando Belo (ICEIS (1), 2004)

Programming Relational Databases for Itemset Mining over Large Transactional Tables. - Ronnie Alves; Orlando Belo (EPIA, 2005)

A Hybrid Method for Discovering Distance-Enhanced Inter-Transactional Rules. - Pedro Gabriel Ferreira; Ronnie Alves; Paulo J. Azevedo; Orlando Belo (JISBD, 2005)

On the Computation of Maximal-Correlated Cuboids Cells. - Ronnie Alves; Orlando Belo (DaWaK, 2006)

Establishing Fraud Detection Patterns Based on Signatures. - Pedro Gabriel Ferreira; Ronnie Alves; Orlando Belo; Luís Cortesão (ICDM, 2006)

Mining Top-K Multidimensional Gradients. - Ronnie Alves; Orlando Belo; Joel Ribeiro (DaWaK, 2007)

Effective OLAP Mining of Evolving Data Marts. - Ronnie Alves; Orlando Belo; Fabio Costa (IDEAS, 2007)

Aggregation-based mining methods: from single to N-dimensional data analysis - Ronnie Alves (2008)

Mining significant change patterns in multidimensional spaces. - Ronnie Alves; Joel Ribeiro; Orlando Belo (Int. J. Bus. Intell. Data Min., 2009)

Ranking Gradients in Multi-Dimensional Spaces. - Ronnie Alves; Joel Ribeiro; Orlando Belo; Jiawei Han 001 (Complex Data Warehousing and Knowledge Discovery for Advanced Retrieval Development, 2010)

Gene association analysis: a survey of frequent pattern mining from gene expression data. - Ronnie Alves; Domingo S. Rodríguez-Baena; Jesús S. Aguilar-Ruiz (Briefings Bioinform., 2010)

Using Papers Citations for Selecting the Best Genomic Databases. - Daniel Lichtnow; Ronnie Alves; José Palazzo Moreira de Oliveira; Ana M. Levin; Oscar Pastor 001; Ignacio Medina Castello; Joaquín Dopazo (SCCC, 2011)

Detecting Abnormal Patterns in Call Graphs Based on the Aggregation of Relevant Vertex Measures. - Ronnie Alves; Pedro Gabriel Ferreira; Joel Ribeiro; Orlando Belo (ICDM, 2012)

RFMirTarget: A Random Forest Classifier for Human miRNA Target Gene Prediction. - Mariana Recamonde Mendoza; Guilherme C. da Fonseca; Guilherme L. de Morais; Ronnie Alves; Ana L. C. Bazzan; Rogerio Margis (BSB, 2012)

A Network-Based Meta-analysis Strategy for the Selection of Potential Gene Modules in Type 2 Diabetes. - Ronnie Alves; Marcus Mendes; Diego Bonnato (BSB, 2013)

A Pipeline for Functional and Visual Analytics of Microbial Genetic Networks. - Leandro Corrêa; Ronnie Alves; Fabiana Rodrigues de Góes; Cristian Chaparro; Lucinéia Thom (DyNaK, 2014)

FUNN-MG: A Metagenomic Systems Biology Computational Framework. - Leandro Corrêa; Ronnie Alves; Fabiana Rodrigues de Góes; Cristian Chaparro; Lucinéia Thom (BSB, 2014)

Towards an Ensemble Learning Strategy for Metagenomic Gene Prediction. - Fabiana Rodrigues de Góes; Ronnie Alves; Leandro Corrêa; Cristian Chaparro; Lucinéia Thom (BSB, 2014)

BION2SEL: An Ontology-Based Approach for the Selection of Molecular Biology Databases. - Daniel Lichtnow; Ronnie Alves; Oscar Pastor 001; Verónica Burriel; José Palazzo Moreira de Oliveira (BSB, 2014)

A Visual-Analytics System for Railway Safety Management. - Wallace P. Lira; Ronnie Alves; Jean Marcel dos Reis Costa; Gustavo Pessin; Lilyan Galvao; Ana Claudia Cardoso; Cleidson R. B. de Souza (IEEE Computer Graphics and Applications, 2014)

The Role of Machine Learning in Finding Chimeric RNAs. - Sacha Beaumeunier; Jerome Audoux; Anthony Boureux; Therese Commes; Nicolas Philippe; Ronnie Alves (DEXA Workshops, 2015)

A Module-Based Approach for Evaluating Differential Genome-Wide Expression Profiles. - Jose Flavio de S. Dias; Ronnie Alves; Therese Commes (BRACIS, 2016)

VCloud: adding interactiveness to word clouds for knowledge exploration in large unstructured texts. - Wallace P. Lira; Fernando Gama; Hivana Melo Barbosa Dall'Agnol; Ronnie Alves; Cleidson R. B. de Souza (SAC, 2016)

Tally: a scoring tool for boundary determination between repetitive and non-repetitive protein sequences. - François D. Richard; Ronnie Alves; Andrey V. Kajava (Bioinform., 2016)

Metagenomics-based signature clustering and interactive visualization analysis. - Vitor Cirilo Araujo Santos; Leandro Corrêa; Bianchi Serique Meiguins; Guilherme Oliveira; Ronnie Alves (IJCNN, 2018)

PIPEBAR and OverlapPER: tools for a fast and accurate DNA barcoding analysis and paired-end assembly. - Renato R. M. Oliveira; Gisele Lopes Nunes; Talvâne Glauber Lopes de Lima; Guilherme Oliveira; Ronnie Alves (BMC Bioinform., 2018)

A Geometry-Based Approach to Visualize High-Dimensional Data. - Caio Flexa; Walisson Cardoso Gomes; Sérgio Viademonte; Claudomiro de Souza de Sales Junior; Ronnie Alves (BRACIS, 2019)

A Random Forest Classifier for Prokaryotes Gene Prediction. - Raíssa Lorena Silva da Silva; Kleber Padovani de Souza; Fabiana Rodrigues de Góes; Ronnie Cley de Oliveira Alves (BRACIS, 2019)

A Clustering Approach to Identify Candidates to Housekeeping Genes Based on RNA-seq Data. - Edian F. Franco; Dener Maués; Ronnie Alves; Luis Guimarães; Vasco Ariston de Carvalho Azevedo; Artur Silva; Preetam Ghosh; Jefferson Morais; Rommel Thiago Juca Ramos (BSB, 2019)

On Clustering Validation in Metagenomics Sequence Binning. - Paulo Oliveira 003; Kleber Padovani de Souza; Ronnie Alves (BSB, 2019)

Genome Assembly Using Reinforcement Learning. - Roberto Xavier; Kleber Padovani de Souza; Annie Chateau; Ronnie Alves (BSB, 2019)

Machine learning meets genome assembly. - Kleber Padovani de Souza; João Carlos Setubal; André Carlos Ponce de Leon Ferreira de Carvalho; Guilherme Oliveira; Annie Chateau; Ronnie Alves (Briefings Bioinform., 2019)

On the utilization of deep and ensemble learning to detect milk adulteration. - Habib Asseiss Neto; Wanessa L. F. Tavares; Daniela C. S. Z. Ribeiro; Ronnie C. O. Alves; Leorges M. Fonseca; Sérgio Vale Aguiar Campos (BioData Min., 2019)

Decoding Machine Learning Benchmarks. - Lucas F. F. Cardoso; Vitor C. A. Santos; Regiane S. K. Francês; Ricardo B. C. Prudêncio; Ronnie C. O. Alves (BRACIS (2), 2020)

NASirt: AutoML based learning with instance-level complexity information. - Habib Asseiss Neto; Ronnie C. O. Alves; Sérgio Vale Aguiar Campos (CoRR, 2020)

Does Dataset Complexity Matters for Model Explainers? - José de S. Ribeiro; Raíssa Lorena Silva da Silva; Lucas F. F. Cardoso; Ronnie Alves (IEEE BigData, 2021)

Prediction of Homicides in Urban Centers: A Machine Learning Approach. - José Ribeiro 005; Lair Meneses; Denis Costa; Wando Miranda; Ronnie Alves (IntelliSys (3), 2021)

geneRFinder: gene finding in distinct metagenomic data complexities. - Raíssa Lorena Silva da Silva; Kleber Padovani de Souza; Fabiana Rodrigues de Góes; Ronnie Alves (BMC Bioinform., 2021)

Towards a reinforcement learning de novo genome assembler. - Kleber Padovani de Souza; Roberto Xavier; André C. P. L. F. de Carvalho; Anna Reali; Annie Chateau; Ronnie Alves (CoRR, 2021)

Does Dataset Complexity Matters for Model Explainers? - José Ribeiro 005; Raíssa Lorena Silva da Silva; Ronnie Alves (CoRR, 2021)

Data vs classifiers, who wins? - Lucas F. F. Cardoso; Vitor C. A. Santos; Regiane S. Kawasaki Francês; Ricardo B. C. Prudêncio; Ronnie C. O. Alves (CoRR, 2021)

Polygonal Coordinate System: Visualizing high-dimensional data using geometric DR, and a deterministic version of t-SNE. - Caio Flexa; Walisson Cardoso Gomes; Igor Moreira; Ronnie Alves; Claudomiro Sales (Expert Syst. Appl., 2021)

Explanation-by-Example Based on Item Response Theory. - Lucas F. F. Cardoso; José de S. Ribeiro; Vitor Cirilo Araujo Santos; Raíssa Lorena Silva da Silva; Marcelle Pereira Mota; Ricardo B. C. Prudêncio; Ronnie C. O. Alves (BRACIS (1), 2022)

Global Explanation of Tree-Ensembles Models Based on Item Response Theory. - José de S. Ribeiro; Lucas F. F. Cardoso; Raíssa Lorena Silva da Silva; Vitor C. A. Santos; Nikolas Jorge S. Carneiro; Ronnie Alves (CoRR, 2022)

Black Box Model Explanations and the Human Interpretability Expectations - An Analysis in the Context of Homicide Prediction. - José Ribeiro 005; Nikolas Jorge S. Carneiro; Ronnie Alves (CoRR, 2022)

Standing on the Shoulders of Giants. - Lucas F. F. Cardoso; José de Sousa Ribeiro Filho; Vitor C. A. Santos; Regiane S. Kawasaki Francês; Ronnie C. O. Alves (BRACIS (2), 2024)

How Reliable and Stable are Explanations of XAI Methods? - José Ribeiro 005; Lucas F. F. Cardoso; Vitor C. A. Santos; Eduardo Carvalho; Nikolas Jorge S. Carneiro; Ronnie Alves (CoRR, 2024)

Explanations based on Item Response Theory (eXirt): A model-specific method to explain tree-ensemble model in trust perspective. - José de Sousa Ribeiro Filho; Lucas Felipe Ferraro Cardoso; Raíssa Lorena Silva da Silva; Nikolas Jorge Santiago Carneiro; Vitor Cirilo Araujo Santos; Ronnie Cley de Oliveira Alves (Expert Syst. Appl., 2024)

Enhancing Classifier Evaluation: A Fairer Benchmarking Strategy Based on Ability and Robustness. - Lucas F. F. Cardoso; Vitor C. A. Santos; José de S. Ribeiro; Regiane Kawasaki; Ricardo B. C. Prudêncio; Ronnie Alves (CoRR, 2025)

Beyond Random Sampling: Instance Quality-Based Data Partitioning via Item Response Theory. - Lucas F. F. Cardoso; Vitor C. A. Santos; José de Sousa Ribeiro Filho; Ricardo B. C. Prudêncio; Regiane Kawasaki; Ronnie Alves (CoRR, 2025)