Time series gene expression data clustering and pattern extraction in Arabidopsis thaliana phosphatase-encoding genes. - Pooya Sobhe Bidari; Roozbeh Manshaei; Tahmineh Lohrasebi; Amir Feizi; Mohammad Ali Malboobi; Javad Alirezaie (BIBE, 2008)

Sparse and Stable Reconstruction of Genetic Regulatory Networks Using Time Series Gene Expression Data. - Roozbeh Manshaei; Matthew J. Kyan (BCB, 2013)

Actibles: Open Source Active Tangibles. - Brien East; Sean DeLong; Roozbeh Manshaei; Ahmed Sabbir Arif; Ali Mazalek (ISS, 2016)

Exploring Genetic Mutations on Mitochondrial DNA Cancer Data with Interactive Tabletop and Active Tangibles. - Roozbeh Manshaei; Nauman Baig; Sean DeLong; Shahin Khayyer; Brien East; Ali Mazalek (ISS, 2016)

Active Pathways: Using Active Tangibles and Interactive Tabletops for Collaborative Modeling in Systems Biology. - Meghna Mehta; Ahmed Sabbir Arif; Apurva Gupta; Sean DeLong; Roozbeh Manshaei; Graceline Williams; Manasvi Lalwani; Sanjay Chandrasekharan; Ali Mazalek (ISS, 2016)

Sparse Tangibles: Collaborative Exploration of Gene Networks using Active Tangibles and Interactive Tabletops. - Ahmed Sabbir Arif; Roozbeh Manshaei; Sean DeLong; Brien East; Matthew J. Kyan; Ali Mazalek (TEI, 2016)

Extending the Design Space of Tangible Objects via Low-Resolution Edge Displays. - Ahmed Sabbir Arif; Brien East; Sean DeLong; Roozbeh Manshaei; Apurva Gupta; Manasvi Lalwani; Ali Mazalek (TEI, 2017)

Tangible mtDNA: A Tangible Tabletop System for Exploring Genetic Mutations on Mitochondrial DNA Cancer Data. - Roozbeh Manshaei; Nauman Baig; Sean DeLong; Shahin Khayyer; Brien East; Ali Mazalek (TEI, 2017)

Tangible Tensors: An Interactive System for Grasping Trends in Biological Systems Modeling. - Roozbeh Manshaei; Uzair Mayat; Aneesh P. Tarun; Sean DeLong; David Chiang 004; Justin Digregorio; Shahin Khayyer; Apurva Gupta; Matthew J. Kyan; Ali Mazalek (Creativity & Cognition, 2019)

Tangible BioNets: Multi-Surface and Tangible Interactions for Exploring Structural Features of Biological Networks. - Roozbeh Manshaei; Sean DeLong; Uzair Mayat; Dhrumil Patal; Matthew J. Kyan; Ali Mazalek (Proc. ACM Hum. Comput. Interact., 2019)

Designing a Mixed Reality System for Exploring Genetic Mutation Data of Cancer Patients. - Syeda Aniqa Imtiaz; Alexander Bakogeorge; Roozbeh Manshaei; Nour Abu Hantash; Ali Mazalek; Caleb Barynin (VR Workshops, 2022)

Tangible Chromatin: Tangible and Multi-surface Interactions for Exploring Datasets from High-Content Microscopy Experiments. - Roozbeh Manshaei; Uzair Mayat; Syeda Aniqa Imtiaz; Veronica Andric; Kazeera Aliar; Nour Abu Hantash; Kashaf Masood; Gabby Resch; Alexander Bakogeorge; Sarah Sabatinos; Ali Mazalek (Proc. ACM Hum. Comput. Interact., 2022)

Embodied Machine Learning. - Alexander Bakogeorge; Syeda Aniqa Imtiaz; Nour Abu Hantash; Roozbeh Manshaei; Ali Mazalek (TEI, 2024)

Exploring Approaches for Handheld Geometric Shape-Changing Tangible Interfaces. - Mohsen Ensafjoo; Chau Nguyen; Paul H. Dietz; Roozbeh Manshaei; Ali Mazalek (TEI, 2025)