An Ant Colony Optimization Algorithm for the 2D HP Protein Folding Problem. - Alena Shmygelska; Rosalía Aguirre-Hernández; Holger H. Hoos (Ant Algorithms, 2002)

Appraisal of Models for the Study of Disease Progression in Psoriatic Arthritis. - Rosalía Aguirre-Hernández; Vern T. Farewell (Advances in Survival Analysis, 2003)

RNAsoft: a suite of RNA secondary structure prediction and design software tools. - Mirela Andronescu; Rosalía Aguirre-Hernández; Anne Condon; Holger H. Hoos (Nucleic Acids Res., 2003)

Computational RNA secondary structure design: empirical complexity and improved methods. - Rosalía Aguirre-Hernández; Holger H. Hoos; Anne Condon (BMC Bioinform., 2007)