Algorithms for Finding the Axis of a Helix: Fast Rotational and Parametric Least-squares Methods. - Jon A. Christopher; Rosemarie Swanson; Thomas O. Baldwin (Comput. Chem., 1996)

An Information Measure of the Quality of Protein Secondary Structure Prediction. - Rosemarie Swanson; Ioannis Kagiampakis; Jerry W. Tsai (J. Comput. Biol., 2008)

Fine grained sampling of residue characteristics using molecular dynamics simulation. - Hyun Joo; Xiaotao Qu; Rosemarie Swanson; C. Michael McCallum; Jerry W. Tsai (Comput. Biol. Chem., 2010)

Relative Packing Groups in Template-Based Structure Prediction: Cooperative Effects of True Positive Constraints. - Ryan Day; Xiaotao Qu; Rosemarie Swanson; Zach Bohannan; Robert Bliss; Jerry W. Tsai (J. Comput. Biol., 2011)