Development of Scientific Software: a Systematic Mapping, a bibliometrics Study, and a Paper Repository. - Roshanak Farhoodi; Vahid Garousi; Dietmar Pfahl; Jonathan Sillito (Int. J. Softw. Eng. Knowl. Eng., 2013)

TIDE: Inter-chromosomal translocation and insertion detection using embeddings. - Rosanne Vetro; Roshanak Farhoodi; Rohith Kotla; Nurit Haspel; David Weisman; Jennifer Rosen; Dan A. Simovici (IEEE BigData, 2014)

Accurate prediction of docked protein structure similarity using neural networks and restricted Boltzmann machines. - Roshanak Farhoodi; Bahar Akbal-Delibas; Nurit Haspel (BIBM, 2015)

Assessing how multiple mutations affect protein stability using rigid cluster size distributions. - Erik Andersson; Rebecca Hsieh; Howard Szeto; Roshanak Farhoodi; Nurit Haspel; Filip Jagodzinski (ICCABS, 2016)

Accurate refinement of docked protein complexes using evolutionary information and deep learning. - Bahar Akbal-Delibas; Roshanak Farhoodi; Marc Pomplun; Nurit Haspel (J. Bioinform. Comput. Biol., 2016)

Ranking Protein-Protein Binding Using Evolutionary Information and Machine Learning. - Roshanak Farhoodi; Bahar Akbal-Delibas; Nurit Haspel (BCB, 2017)

Predicting the Effect of Point Mutations on Protein Structural Stability. - Roshanak Farhoodi; Max Shelbourne; Rebecca Hsieh; Nurit Haspel; Brian Hutchinson; Filip Jagodzinski (BCB, 2017)

Machine Learning Approaches for Predicting Protein Complex Similarity. - Roshanak Farhoodi; Bahar Akbal-Delibas; Nurit Haspel (J. Comput. Biol., 2017)