A space-efficient algorithm for local similarities. - Xiaoqiu Huang 001; Ross C. Hardison; Webb Miller (Comput. Appl. Biosci., 1990)

Parallelization of a local similarity algorithm. - Xiaoqiu Huang 001; Webb Miller; Scott Schwartz; Ross C. Hardison (Comput. Appl. Biosci., 1992)

Locating well-conserved regions within a pairwise alignment. - Kun-Mao Chao; Ross C. Hardison; Webb Miller (Comput. Appl. Biosci., 1993)

Recent Developments in Linear-Space Alignment Methods: A Survey. - Kun-Mao Chao; Ross C. Hardison; Webb Miller (J. Comput. Biol., 1994)

Constructing Aligned Sequence Blocks. - Webb Miller; Mark Boguski; Balaji Raghavachari; Zheng Zhang 004; Ross C. Hardison (J. Comput. Biol., 1994)

Chaining Multiple-Alignment Blocks. - Zheng Zhang 004; Balaji Raghavachari; Ross C. Hardison; Webb Miller (J. Comput. Biol., 1994)

A database for globin gene expression data. - Webb Miller; Ahmed Elsherbini; Jamie Peck; Cathy Riemer; Scott Schwartz; Nikola Stojanovic; Ross C. Hardison (HICSS (5), 1995)

A Linear-Time Algorithm for the 1-Mismatch Problem. - Nikola Stojanovic; Piotr Berman; Deborah Gumucio; Ross C. Hardison; Webb Miller (WADS, 1997)

MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences. - Scott Schwartz; Laura Elnitski; Mei Li; Matthew T. Weirauch; Cathy Riemer; Arian Smit; Eric D. Green; Ross C. Hardison; Webb Miller (Nucleic Acids Res., 2003)

Improvements in the HbVar database of human hemoglobin variants and thalassemia mutations for population and sequence variation studies. - George P. Patrinos; Belinda Giardine; Cathy Riemer; Webb Miller; David H. K. Chui; Nicholas P. Anagnou; Henri Wajcman; Ross C. Hardison (Nucleic Acids Res., 2004)

Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results. - Laura Elnitski; Belinda Giardine; Prachi Shah; Yi Zhang; Cathy Riemer; Matthew T. Weirauch; Richard Burhans; Webb Miller; Ross C. Hardison (Nucleic Acids Res., 2005)

ORegAnno: an open-access community-driven resource for regulatory annotation. - Obi L. Griffith; Stephen B. Montgomery; Bridget Bernier; Bryan Chu; Katayoon Kasaian; Stein Aerts; Shaun Mahony; Monica C. Sleumer; Mikhail Bilenky; Maximilian Haeussler; Malachi Griffith; Steven M. Gallo; et al. (Nucleic Acids Res., 2008)

Aligning Two Genomic Sequences That Contain Duplications. - Minmei Hou; Cathy Riemer; Piotr Berman; Ross C. Hardison; Webb Miller (RECOMB-CG, 2009)

Whole-Genome Analysis of Gene Conversion Events. - Chih-Hao Hsu; Yu Zhang 002; Ross C. Hardison; Webb Miller (RECOMB-CG, 2009)

An Effective Method for Detecting Gene Conversion Events in Whole Genomes. - Chih-Hao Hsu; Yu Zhang 002; Ross C. Hardison; Eric D. Green; Webb Miller (J. Comput. Biol., 2010)

MRHMMs: Multivariate Regression Hidden Markov Models and the variantS. - Yeonok Lee; Debashis Ghosh; Ross C. Hardison; Yu Zhang 002 (Bioinform., 2014)

Updates of the HbVar database of human hemoglobin variants and thalassemia mutations. - Belinda Giardine; Joseph Borg; Emmanouil Viennas; Cristiana Pavlidis; Kamran Moradkhani; Philippe Joly; Marina Bartsakoulia; Cathy Riemer; Webb Miller; Giannis Tzimas; Henri Wajcman; Ross C. Hardison; et al. (Nucleic Acids Res., 2014)

Topologically associating domains are stable units of replication-timing regulation Open. - Benjamin D. Pope; Tyrone Ryba; Vishnu Dileep; Feng Yue; Wei-Sheng Wu; Olgert Denas; Daniel L. Vera; Yanli Wang; R. Scott Hansen; Theresa K. Canfield; Robert E. Thurman; Yong Cheng; et al. (Nat., 2014)

SBR-Blood: systems biology repository for hematopoietic cells. - Jens Lichtenberg; Elisabeth F. Heuston; Tejaswini Mishra; Cheryl A. Keller; Ross C. Hardison; David M. Bodine (Nucleic Acids Res., 2016)

Systems Biology in Heterogenous Tissues: Integrating Multiple *Omics Datasets to Understand Hematopoietic Differentiation. - Jens Lichtenberg; Guanjue Xiang; Elisabeth F. Heuston; Belinda Giardine; Cheryl A. Keller; Ross C. Hardison; David M. Bodine; Yu Zhang 002 (BIBE, 2019)

The changing mouse embryo transcriptome at whole tissue and single-cell resolution. - Peng He; Brian A. Williams; Diane Trout; Georgi K. Marinov; Henry Amrhein; Libera Berghella; Say-Tar Goh; Ingrid Plajzer-Frick; Veena Afzal; Len A. Pennacchio; Diane E. Dickel; Axel Visel; et al. (Nat., 2020)

S3V2-IDEAS: a package for normalizing, denoising and integrating epigenomic datasets across different cell types. - Guanjue Xiang; Belinda Giardine; Shaun Mahony; Yu Zhang 002; Ross C. Hardison (Bioinform., 2021)

Clinically relevant updates of the HbVar database of human hemoglobin variants and thalassemia mutations. - Belinda Giardine; Philippe Joly; Serge Pissard; Henri Wajcman; David H. K. Chui; Ross C. Hardison; George P. Patrinos (Nucleic Acids Res., 2021)

Snapshot: a package for clustering and visualizing epigenetic history during cell differentiation. - Guanjue Xiang; Belinda Giardine; Lin An; Chen Sun; Cheryl A. Keller; Elisabeth F. Heuston; Stacie M. Anderson; Martha Kirby; David M. Bodine; Yu Zhang 002; Ross C. Hardison (BMC Bioinform., 2023)