SNPs Problems, Complexity, and Algorithms. - Giuseppe Lancia; Vineet Bafna; Sorin Istrail; Ross Lippert; Russell Schwartz (ESA, 2001)

A Survey of Computational Methods for Determining Haplotypes. - Bjarni V. Halldórsson; Vineet Bafna; Nathan Edwards; Ross Lippert; Shibu Yooseph; Sorin Istrail (Computational Methods for SNPs and Haplotype Inference, 2002)

Generating Peptide Candidates from Amino-Acid Sequence Databases for Protein Identification via Mass Spectrometry. - Nathan Edwards; Ross Lippert (WABI, 2002)

Algorithmic strategies for the single nucleotide polymorphism haplotype assembly problem. - Ross Lippert; Russell Schwartz; Giuseppe Lancia; Sorin Istrail (Briefings Bioinform., 2002)

Combinatorial Problems Arising in SNP and Haplotype Analysis. - Bjarni V. Halldórsson; Vineet Bafna; Nathan Edwards; Ross Lippert; Shibu Yooseph; Sorin Istrail (DMTCS, 2003)

Syntenic Layout of Two Assemblies of Related Genomes. - Olaf Delgado-Friedrichs; Aaron L. Halpern; Ross Lippert; Christian Rausch; Stephan C. Schuster; Daniel H. Huson (German Conference on Bioinformatics, 2004)

Sequence Database Compression for Peptide Identification from Tandem Mass Spectra. - Nathan Edwards; Ross Lippert (WABI, 2004)

Asymptotics of Gaussian Regularized Least Squares. - Ross A. Lippert; Ryan M. Rifkin (NIPS, 2005)

Space-Efficient Whole Genome Comparisons with BurrowsWheeler Transforms. - Ross Lippert (J. Comput. Biol., 2005)

A Space-Efficient Construction of the Burrows-Wheeler Transform for Genomic Data. - Ross A. Lippert; Clark M. Mobarry; Brian Walenz (J. Comput. Biol., 2005)

Finding Anchors for Genomic Sequence Comparison. - Ross A. Lippert; Xiaoyue Zhao; Liliana Florea; Clark M. Mobarry; Sorin Istrail (J. Comput. Biol., 2005)

Infinite-sigma Limits For Tikhonov Regularization. - Ross A. Lippert; Ryan M. Rifkin (J. Mach. Learn. Res., 2006)

Value Regularization and Fenchel Duality. - Ryan M. Rifkin; Ross A. Lippert (J. Mach. Learn. Res., 2007)

Improved twiddle access for fast fourier transforms. - Kevin J. Bowers; Ross A. Lippert; Ron O. Dror; David E. Shaw (IEEE Trans. Signal Process., 2010)