Metabolic systems cost-benefit analysis for interpreting network structure and regulation. - Ross P. Carlson (Bioinform., 2007)

Metabolic systems cost-benefit analysis for interpreting network structure and regulation - Erratum. - Ross P. Carlson (Bioinform., 2007)

Decomposition of complex microbial behaviors into resource-based stress responses. - Ross P. Carlson (Bioinform., 2009)

In silico approaches to study mass and energy flows in microbial consortia: a syntrophic case study. - Reed L. Taffs; John E. Aston; Kristen Brileya; Zackary Jay; Christian G. Klatt; Shawn E. McGlynn; Natasha Mallette; Scott Montross; Robin Gerlach; William P. Inskeep; David M. Ward; Ross P. Carlson (BMC Syst. Biol., 2009)

Complete enumeration of elementary flux modes through scalable demand-based subnetwork definition. - Kristopher A. Hunt; James P. Folsom; Reed L. Taffs; Ross P. Carlson (Bioinform., 2014)

Metabolic modeling of a chronic wound biofilm consortium predicts spatial partitioning of bacterial species. - Poonam Phalak; Jin Chen; Ross P. Carlson; Michael A. Henson (BMC Syst. Biol., 2016)

Multiscale analysis of autotroph-heterotroph interactions in a high-temperature microbial community. - Kristopher A. Hunt; Ryan M. Jennings; William P. Inskeep; Ross P. Carlson (PLoS Comput. Biol., 2018)

Multiscale Flux-Based Modeling of Biofilm Communities. - Tianyu Zhang; Albert Parker; Ross P. Carlson; Phil S. Stewart; Isaac Klapper (Multiscale Model. Simul., 2020)