Application of MDGRAPE-3, a special purpose board for molecular dynamics simulations, to periodic biomolecular systems. - Gota Kikugawa; Rossen Apostolov; Narutoshi Kamiya; Makoto Taiji; Ryutaro Himeno; Haruki Nakamura; Yasushige Yonezawa (J. Comput. Chem., 2009)

Scaling of the GROMACS 4.6 molecular dynamics code on SuperMUC. - Carsten Kutzner; Rossen Apostolov; Berk Hess; Helmut Grubmüller (PARCO, 2013)

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit. - Sander Pronk; Szilárd Páll; Roland Schulz; Per Larsson; Pär Bjelkmar; Rossen Apostolov; Michael R. Shirts; Jeremy C. Smith; Peter M. Kasson; David van der Spoel; Berk Hess; Erik Lindahl (Bioinform., 2013)

An efficient and extensible format, library, and API for binary trajectory data from molecular simulations. - Magnus Lundborg; Rossen Apostolov; Daniel Spångberg; Anders Gärdenäs; David van der Spoel; Erik Lindahl (J. Comput. Chem., 2014)

Sharing Data from Molecular Simulations. - Mark James Abraham; Rossen Apostolov; Jonathan Barnoud; Paul Bauer; Christian Blau; Alexandre M. J. J. Bonvin; Matthieu Chavent; John D. Chodera; Karmen Condic-Jurkic; Lucie Delemotte; Helmut Grubmüller; Rebecca J. Howard; et al. (J. Chem. Inf. Model., 2019)