QuasiMotiFinder: protein annotation by searching for evolutionarily conserved motif-like patterns. - Roee Gutman; Carine Berezin; Roy Wollman; Yossi Rosenberg; Nir Ben-Tal (Nucleic Acids Res., 2005)

Information transmission from NFkB signaling dynamics to gene expression. - Alok K. Maity; Roy Wollman (PLoS Comput. Biol., 2020)

scPNMF: sparse gene encoding of single cells to facilitate gene selection for targeted gene profiling. - Dongyuan Song; Kexin Li; Zachary Hemminger; Roy Wollman; Jingyi Jessica Li (Bioinform., 2021)