Prediction of Chimeric Protein Fold. - Ruben Acuña; Zoé Lacroix; Fayez Hadji; Jacques Chomilier; Nikolaos Papandreou (BIOINFORMATICS, 2012)

Refurbishing Legacy Biological Workflows SPROUTS Case Study. - Ruben Acuña; Zoé Lacroix; Jacques Chomilier (SERVICES, 2012)

A Workflow for the Prediction of the Effects of Residue Substitution on Protein Stability. - Ruben Acuña; Zoé Lacroix; Jacques Chomilier (PRIB, 2013)

Protein intrachain contact prediction with most interacting residues (MIR). - Ruben Acuña; Zoé Lacroix; Nikolaos Papandreou; Jacques Chomilier (Bio Algorithms Med Syst., 2014)

Instrumentation and Trace Analysis for Ad-Hoc Python Workflows in Cloud Environments. - Ruben Acuña; Zoé Lacroix; Rida A. Bazzi (CLOUD, 2015)

Managing and Documenting Legacy Scientific Workflows. - Ruben Acuña; Jacques Chomilier; Zoé Lacroix (J. Integr. Bioinform., 2015)

Extracting Semantics from Legacy Scientific Workflows. - Ruben Acuña; Zoé Lacroix (ICSC, 2016)

Correlating topology and thermodynamics to predict protein structure sensitivity to point mutations. - Paula Milan Rodriguez; Dirk Stratmann; Elodie Duprat; Nikolaos Papandreou; Ruben Acuña; Zoé Lacroix; Jacques Chomilier (Bio Algorithms Med Syst., 2018)

Analysis-Design-Justification (ADJ): A Framework to Develop Problem-Solving Skills. - Ruben Acuña; Ajay Bansal (EDUCON, 2021)

SimInt: A Structured Experience to Develop Mature Engineering Mindset. - Ruben Acuña; Ajay Bansal (FIE, 2021)

Leveraging the ADJ Framework to Improve Real-World Problem-Solving Skills in Computing Courses. - Ruben Acuña; Ajay Bansal (ITiCSE (1), 2021)

Using Programming Autograder Formative Data to Understand Student Growth. - Ruben Acuña; Ajay Bansal (FIE, 2022)

Developing a Data Science Course to Support Software Engineering Students. - Ruben Acuña (CSEE&T, 2023)

Assessing Student Programming Process Using Automated Reasoning. - Ruben Acuña; Ajay Bansal (FIE, 2023)

Autograder Impact on Software Design Outcomes. - Ruben Acuña; Tyler Baron; Srividya Kona Bansal (FIE, 2023)

WIP: Characterizing Student Programming Activity. - Ruben Acuña; Ajay Bansal (FIE, 2024)

Improving Student Learning with Automated Assessment. - Ruben Acuña; Ajay Bansal (ITiCSE (1), 2024)