Graphical models for inferring single molecule dynamics. - Jonathan E. Bronson; Jake M. Hofman; Jingyi Fei; Ruben L. Gonzalez; Chris H. Wiggins 001 (BMC Bioinform., 2010)

Hierarchically-coupled hidden Markov models for learning kinetic rates from single-molecule data. - Jan-Willem van de Meent; Jonathan E. Bronson; Frank D. Wood; Ruben L. Gonzalez; Chris Wiggins 001 (ICML (2), 2013)

Single-molecule dataset (SMD): a generalized storage format for raw and processed single-molecule data. - Max Greenfeld; Jan-Willem van de Meent; Dmitri S. Pavlichin; Hideo Mabuchi; Chris H. Wiggins 001; Ruben L. Gonzalez; Daniel Herschlag (BMC Bioinform., 2015)