CentrosomeDB: a human centrosomal proteins database. - Rubén Nogales-Cadenas; Federico Abascal; Javier Díez-Pérez; José María Carazo; Alberto D. Pascual-Montano (Nucleic Acids Res., 2009)

GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information. - Rubén Nogales-Cadenas; Pedro Carmona-Saez; Miguel Vázquez; Cesar Vicente; Xiaoyuan Yang 001; Francisco Tirado; José María Carazo; Alberto D. Pascual-Montano (Nucleic Acids Res., 2009)

SENT: semantic features in text. - Miguel Vázquez; Pedro Carmona-Saez; Rubén Nogales-Cadenas; Monica Chagoyen; Francisco Tirado; José María Carazo; Alberto D. Pascual-Montano (Nucleic Acids Res., 2009)

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. - Ignacio Medina; José Carbonell; Luis Pulido; Sara C. Madeira; Stefan Götz 003; Ana Conesa; Joaquín Tárraga; Alberto D. Pascual-Montano; Rubén Nogales-Cadenas; Javier Santoyo; Francisco García-García 002; Martina Marbà; et al. (Nucleic Acids Res., 2010)

MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures. - Miguel Vázquez; Rubén Nogales-Cadenas; Javier Arroyo; Pedro Botías; Raul García; José María Carazo; Francisco Tirado; Alberto D. Pascual-Montano; Pedro Carmona-Saez (Nucleic Acids Res., 2010)

Finding closed frequent item sets by intersecting transactions. - Christian Borgelt; Xiaoyuan Yang 001; Rubén Nogales-Cadenas; Pedro Carmona-Saez; Alberto D. Pascual-Montano (EDBT, 2011)

GeneCodis3: a non-redundant and modular enrichment analysis tool for functional genomics. - Daniel Tabas-Madrid; Rubén Nogales-Cadenas; Alberto D. Pascual-Montano (Nucleic Acids Res., 2012)

3DEM Loupe: analysis of macromolecular dynamics using structures from electron microscopy. - Rubén Nogales-Cadenas; Slavica Jonic; Florence Tama; A. A. Arteni; Daniel Tabas-Madrid; Miguel Vázquez; Alberto D. Pascual-Montano; Carlos Oscar Sánchez Sorzano (Nucleic Acids Res., 2013)

CentrosomeDB: a new generation of the centrosomal proteins database for Human and Drosophila melanogaster. - Joao Miguel da Conceiçao Alves-Cruzeiro; Rubén Nogales-Cadenas; Alberto Domingo Pascual-Montano (Nucleic Acids Res., 2014)

Prioritization of Schizophrenia Risk Genes by a Network-Regularized Logistic Regression Method. - Wen Zhang; Jhin-Rong Lin; Rubén Nogales-Cadenas; Quanwei Zhang; Ying Cai; Zhengdong D. Zhang (IWBBIO, 2016)