ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design. - Pascal Notin; Aaron Kollasch; Daniel Ritter 006; Lood van Niekerk; Steffanie Paul; Han Spinner; Nathan J. Rollins; Ada Shaw; Rose Orenbuch; Ruben Weitzman; Jonathan Frazer; Mafalda Dias; et al. (NeurIPS, 2023)

ProteinNPT: Improving protein property prediction and design with non-parametric transformers. - Pascal Notin; Ruben Weitzman; Debora S. Marks; Yarin Gal (NeurIPS, 2023)

Protriever: End-to-End Differentiable Protein Homology Search for Fitness Prediction. - Ruben Weitzman; Peter Mørch Groth; Lood van Niekerk; Aoi Otani; Yarin Gal; Debora S. Marks; Pascal Notin (CoRR, 2025)