Evaluation of large language models for discovery of gene set function. - Mengzhou Hu; Sahar Alkhairy; Ingoo Lee; Rudolf T. Pillich; Robin Bachelder; Trey Ideker; Dexter Pratt (CoRR, 2023)

NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data Exchange. - Rudolf T. Pillich; Jing Chen; Christopher Churas; Dylan Fong; Benjamin M. Gyori; Trey Ideker; Klas Karis; Sophie N. Liu; Keiichiro Ono; Alexander R. Pico; Dexter Pratt (Bioinform., 2023)

Translating desktop success to the web in the cytoscape project. - Dexter Pratt; Rudolf T. Pillich; John H. Morris (Frontiers Bioinform., 2023)