Biomedical Word Sense Disambiguation with Word Embeddings. - Rui Antunes 002; Sérgio Matos (PACBB, 2017)

Supervised Learning and Knowledge-Based Approaches Applied to Biomedical Word Sense Disambiguation. - Rui Antunes 002; Sérgio Matos (J. Integr. Bioinform., 2017)

Protein-Protein Interaction Article Classification Using a Convolutional Recurrent Neural Network with Pre-trained Word Embeddings. - Sérgio Matos; Rui Antunes 002 (J. Integr. Bioinform., 2017)

Rule-based and Machine Learning Hybrid System for Patient Cohort Selection. - Rui Antunes 002; João Figueira Silva; Arnaldo Pereira; Sérgio Matos (HEALTHINF, 2019)

Extraction of chemical-protein interactions from the literature using neural networks and narrow instance representation. - Rui Antunes 002; Sérgio Matos (Database J. Biol. Databases Curation, 2019)

Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine. - Rezarta Islamaj Dogan; Sun Kim; Andrew Chatr-aryamontri; Chih-Hsuan Wei; Donald C. Comeau; Rui Antunes 002; Sérgio Matos; Qingyu Chen 001; Aparna Elangovan; Nagesh C. Panyam; Karin Verspoor; Hongfang Liu; et al. (Database J. Biol. Databases Curation, 2019)

Understanding Depression from Psycholinguistic Patterns in Social Media Texts. - Alina Trifan; Rui Antunes 002; Sérgio Matos; José Luís Oliveira (ECIR (2), 2020)

Clinical Concept Normalization on Medical Records Using Word Embeddings and Heuristics. - João Figueira Silva; Rui Antunes 002; João Rafael Almeida; Sérgio Matos (MIE, 2020)

Machine Learning for Depression Screening in Online Communities. - Alina Trifan; Rui Antunes 002; José Luís Oliveira (PACBB, 2020)

Evaluating semantic textual similarity in clinical sentences using deep learning and sentence embeddings. - Rui Antunes 002; João Figueira Silva; Sérgio Matos (SAC, 2020)

Automatic analysis of artistic paintings using information-based measures. - Jorge Miguel Silva; Diogo Pratas; Rui Antunes 002; Sérgio Matos; Armando J. Pinho (Pattern Recognit., 2021)

Chemical identification and indexing in PubMed full-text articles using deep learning and heuristics. - Tiago Melo Almeida; Rui Antunes 002; João Figueira Silva; João Rafael Almeida; Sérgio Matos (Database J. Biol. Databases Curation, 2022)

Chemical identification and indexing in full-text articles: an overview of the NLM-Chem track at BioCreative VII. - Robert Leaman; Rezarta Islamaj; Virginia Adams; Mohammed Alliheedi; João Rafael Almeida; Rui Antunes 002; Robert Bevan; Yung-Chun Chang; Arslan Erdengasileng; Matthew Hodgskiss; Ryuki Ida; Hyunjae Kim; et al. (Database J. Biol. Databases Curation, 2023)

Biomedical information extraction with natural language processing and machine learning methods - Rui Antunes 002 (2023)

HealthDBFinder: a question-answering task for health database discovery. - João Rafael Almeida; Jorge Miguel Silva; Luís Carlos Afonso; Tiago Melo Almeida; Rui Antunes 002; Richard A. A. Jonker; João António Reis; Dimitri Alexandre da Silva; Sérgio Matos; José Luís Oliveira (CBMS, 2024)

Towards discovery: an end-to-end system for uncovering novel biomedical relations. - Tiago Melo Almeida; Richard Adolph Aires Jonker; Rui Antunes 002; João Rafael Almeida; Sérgio Matos (Database J. Biol. Databases Curation, 2024)

Multi-head CRF classifier for biomedical multi-class named entity recognition on Spanish clinical notes. - Richard A. A. Jonker; Tiago Melo Almeida; Rui Antunes 002; João Rafael Almeida; Sérgio Matos (Database J. Biol. Databases Curation, 2024)