Comprehensive analysis of partial methylation domains in colorectal cancer based on single-cell methylation profiles. - Yan Huang; Pingping Wang; Wenyang Zhou; Meng Luo 001; Zhaochun Xu; Rui Cheng 003; Chang Xu; Xiyun Jin; Yiqun Li; Qinghua Jiang (Briefings Bioinform., 2021)

Global characterization of B cell receptor repertoire in COVID-19 patients by single-cell V(D)J sequencing. - Xiyun Jin; Wenyang Zhou; Meng Luo 001; Pingping Wang; Zhaochun Xu; Kexin Ma 003; Huimin Cao; Chang Xu; Yan Huang; Rui Cheng 003; Lixing Xiao; Xiaoyu Lin; et al. (Briefings Bioinform., 2021)

Identification of alternative splicing-derived cancer neoantigens for mRNA vaccine development. - Rui Cheng 003; Zhaochun Xu; Meng Luo 001; Pingping Wang; Huimin Cao; Xiyun Jin; Wenyang Zhou; Lixing Xiao; Qinghua Jiang (Briefings Bioinform., 2022)

Single-cell transcriptomics reveals the interaction between peripheral CD4+ CTLs and mesencephalic endothelial cells mediated by IFNG in Parkinson's disease. - Shi Yan; Yao Si; Wenyang Zhou; Rui Cheng 003; Pingping Wang; Di Wang; Wencai Ding; Wanying Shi; Qinghua Jiang; Fan Yang; Lifen Yao (Comput. Biol. Medicine, 2023)

DeepCCI: a deep learning framework for identifying cell-cell interactions from single-cell RNA sequencing data. - Wenyi Yang; Pingping Wang; Meng Luo 001; Yideng Cai; Chang Xu; Guangfu Xue; Xiyun Jin; Rui Cheng 003; Jinhao Que; Fenglan Pang; Yuexin Yang; Huan Nie; et al. (Bioinform., 2023)