A machine learning approach to identify DNA replication proteins from sequence-derived features. - Runtao Yang; Chengjin Zhang; Rui Gao 006; Lina Zhang 001 (CCECE, 2015)

Incorporating g-gap dipeptide composition and position specific scoring matrix for identifying antioxidant proteins. - Lina Zhang 001; Chengjin Zhang; Rui Gao 006; Runtao Yang (CCECE, 2015)

Prediction of aptamer-protein interacting pairs using an ensemble classifier in combination with various protein sequence attributes. - Lina Zhang 001; Chengjin Zhang; Rui Gao 006; Runtao Yang; Qing Song 002 (BMC Bioinform., 2016)

Force Perception of Industrial Robot Based on Multi-parameter Coupled Model. - Xuting Yang; Fengming Li; Rui Gao 006; Rui Song 002; Yibin Li 001 (ROBIO, 2019)

mHMDA: Human Microbe-Disease Association Prediction by Matrix Completion and Multi-Source Information. - Chuanyan Wu; Rui Gao 006; Yusen Zhang 002 (IEEE Access, 2019)

PTPD: predicting therapeutic peptides by deep learning and word2vec. - Chuanyan Wu; Rui Gao 006; Yusen Zhang 002; Yang De Marinis (BMC Bioinform., 2019)

Predicting FAD Interacting Residues with Feature Selection and Comprehensive Sequence Descriptors. - Runtao Yang; Chengjin Zhang; Rui Gao 006; Lina Zhang 001; Qing Song 002 (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

PCSPred_SC: Prediction of Protein Citrullination Sites Using an Effective Sequence-Based Combined Method. - Lina Zhang 001; Jingui Chen; Chengjin Zhang; Rui Gao 006; Runtao Yang (IEEE Access, 2020)

A Semi-Supervised Learning Algorithm for Predicting MiRNA-Disease Association. - Na Yu; Zhi-Ping Liu; Rui Gao 006 (BIBM, 2021)

FS-GBDT: identification multicancer-risk module via a feature selection algorithm by integrating Fisher score and GBDT. - Jialin Zhang; Da Xu; Kaijing Hao; Yusen Zhang 002; Wei Chen 039; Jiaguo Liu; Rui Gao 006; Chuanyan Wu; Yang De Marinis (Briefings Bioinform., 2021)

Predicting multiple types of MicroRNA-disease associations based on tensor factorization and label propagation. - Na Yu; Zhi-Ping Liu; Rui Gao 006 (Comput. Biol. Medicine, 2022)

A Tensor Method Based on Enhanced Tensor Nuclear Norm and Hypergraph Laplacian Regularization for Pan-Cancer Omics Data Analysis. - Na Yu; Yusen Zhang 002; Rui Gao 006 (IEEE J. Biomed. Health Informatics, 2023)

MaxCLK: discovery of cancer driver genes via maximal clique and information entropy of modules. - Jian Liu; Fubin Ma; Yongdi Zhu; Naiqian Zhang; Lingming Kong; Jia Mi; Haiyan Cong; Rui Gao 006; Mingyi Wang; Yusen Zhang 002 (Bioinform., 2023)

A Trajectory Planning Method Based on Imitation Learning for Hydraulic Robotic Manipulators. - Xuli Liu; Yukun Zheng; Song Gao; Rui Song 002; Rui Gao 006; Yibin Li 001 (ROBIO, 2024)

SCSMD: Single Cell Consistent Clustering based on Spectral Matrix Decomposition. - Ran Jia; Ying-Zan Ren; Po-Nian Li; Rui Gao 006; Yusen Zhang 002 (Briefings Bioinform., 2024)

LogicGep: Boolean networks inference using symbolic regression from time-series transcriptomic profiling data. - Dezhen Zhang; Shuhua Gao; Zhi-Ping Liu; Rui Gao 006 (Briefings Bioinform., 2024)

Intelligent tongue diagnosis model for gastrointestinal diseases based on tongue images. - Xu Qiao; Chenyang Lu 009; Miao Duan; Zhiping Liu; Yiran Liu; Wei Chen 039; Rui Gao 006; Zhen Li; Xiuli Zuo (Biomed. Signal Process. Control., 2024)

GCNPMDA: Human microbe-disease association prediction by hierarchical graph convolutional network with layer attention. - Chuanyan Wu; Bentao Lin; Huanghe Zhang; Da Xu; Rui Gao 006; Rui Song 002; Zhi-Ping Liu; Yang De Marinis (Biomed. Signal Process. Control., 2025)

Deconer: An Evaluation Toolkit for Reference-based Deconvolution Methods Using Gene Expression Data. - Wei Zhang 241; Xianglin Zhang; Qiao Liu 008; Lei Wei; Xu Qiao; Rui Gao 006; Zhiping Liu; Xiaowo Wang (Genom. Proteom. Bioinform., 2025)

BIGFormer: A Graph Transformer With Local Structure Awareness for Diagnosis and Pathogenesis Identification of Alzheimer's Disease Using Imaging Genetic Data. - Qi Zou 003; Junliang Shang; Jin-Xing Liu 001; Rui Gao 006 (IEEE J. Biomed. Health Informatics, 2025)