Enabling robust offline active learning for machine learning potentials using simple physics-based priors. - Muhammed Shuaibi; Saurabh Sivakumar; Rui Qi Chen; Zachary W. Ulissi (Mach. Learn. Sci. Technol., 2021)

AmpTorch: A Python package for scalable fingerprint-based neural network training on multi-element systems with integrated uncertainty quantification. - Muhammed Shuaibi; Yuge Hu; Xiangyun Lei; Benjamin M. Comer; Matt Adams; Jacob Paras; Rui Qi Chen; Eric Musa; Joseph Musielewicz; Andrew A. Peterson; Andrew J. Medford; Zachary W. Ulissi (J. Open Source Softw., 2023)

Oral-Anatomical Knowledge-Informed Semi-Supervised Learning for 3D Dental CBCT Segmentation and Lesion Detection. - Yeonju Lee; Mingu Kwak; Rui Qi Chen; Hao Yan; Muralidhar Mupparapu; Fleming Lure; Frank C. Setzer; Jing Li 016 (IEEE Trans Autom. Sci. Eng., 2025)