Haplotype reconstruction from SNP fragments by minimum error correction. - Rui-Sheng Wang; Ling-Yun Wu; Zhen-Ping Li; Xiang-Sun Zhang (Bioinform., 2005)

Haplotype assembly from aligned weighted SNP fragments. - Yu-Ying Zhao; Ling-Yun Wu; Ji-Hong Zhang; Rui-Sheng Wang; Xiang-Sun Zhang (Comput. Biol. Chem., 2005)

Sequences of Fuzzy-Valued Choquet Integrable Functions. - Rui-Sheng Wang; Ming-Hu Ha 001 (ICFIE, 2007)

Identifying Modules in Complex Networks by a Graph-Theoretical Method and Its Application in Protein Interaction Networks. - Rui-Sheng Wang; Shi-Hua Zhang; Xiang-Sun Zhang; Luonan Chen (ICIC (2), 2007)

Detecting Community Structure in Complex Networks by Optimal Rearrangement Clustering. - Rui-Sheng Wang; Yong Wang 001; Xiang-Sun Zhang; Luonan Chen (PAKDD Workshops, 2007)

Inferring transcriptional regulatory networks from high-throughput data. - Rui-Sheng Wang; Yong Wang 001; Xiang-Sun Zhang; Luonan Chen (Bioinform., 2007)

Analysis on multi-domain cooperation for predicting protein-protein interactions. - Rui-Sheng Wang; Yong Wang 001; Ling-Yun Wu; Xiang-Sun Zhang; Luonan Chen (BMC Bioinform., 2007)

Automatic Modeling of Signal Pathways from Protein-Protein Interaction Networks. - Xing-Ming Zhao; Rui-Sheng Wang; Luonan Chen; Kazuyuki Aihara (APBC, 2008)

Reconstruction of Regulator Activity in E. coli Post-Transcription Processes. - Rui-Sheng Wang; Guangxu Jin; Xiang-Sun Zhang; Luonan Chen (BIBM, 2008)

On the properties of sequences of fuzzy-valued Choquet integrable functions. - Rui-Sheng Wang; Ming-Hu Ha 001 (Fuzzy Optim. Decis. Mak., 2008)

Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures. - Rui-Sheng Wang; Shi-Hua Zhang; Yong Wang 001; Xiang-Sun Zhang; Luonan Chen (Neurocomputing, 2008)

Remarks on Network Community Properties. - Jiguang Wang; Yu-Qing Qiu; Rui-Sheng Wang; Xiang-Sun Zhang (J. Syst. Sci. Complex., 2008)

Modeling post-transcriptional regulation activity of small non-coding RNAs in Escherichia coli. - Rui-Sheng Wang; Guangxu Jin; Xiang-Sun Zhang; Luonan Chen (BMC Bioinform., 2009)

Automatic Modeling of Signaling Pathways by Network Flow Model. - Xing-Ming Zhao; Rui-Sheng Wang; Luonan Chen; Kazuyuki Aihara (J. Bioinform. Comput. Biol., 2009)

Self-organizing map approaches for the haplotype assembly problem. - Ling-Yun Wu; Zhen-Ping Li; Rui-Sheng Wang; Xiang-Sun Zhang; Luonan Chen (Math. Comput. Simul., 2009)

Fuzzy System Methods in Modeling Gene Expression and Analyzing Protein Networks. - Shi-Hua Zhang; Rui-Sheng Wang; Xiang-Sun Zhang; Luonan Chen (Fuzzy Systems in Bioinformatics and Computational Biology, 2009)

Maximum cut in fuzzy nature: Models and algorithms. - Rui-Sheng Wang; Li-Min Wang (J. Comput. Appl. Math., 2010)

Self-organizing map of complex networks for community detection. - Zhen-Ping Li; Rui-Sheng Wang; Xiang-Sun Zhang; Luonan Chen (J. Syst. Sci. Complex., 2010)

Two-stage flux balance analysis of metabolic networks for drug target identification. - Zhen-Ping Li; Rui-Sheng Wang; Xiang-Sun Zhang (BMC Syst. Biol., 2011)

Elementary signaling modes predict the essentiality of signal transduction network components. - Rui-Sheng Wang; Réka Albert (BMC Syst. Biol., 2011)

Dynamical and Structural Analysis of a T Cell Survival Network Identifies Novel Candidate Therapeutic Targets for Large Granular Lymphocyte Leukemia. - Assieh Saadatpour; Rui-Sheng Wang; Aijun Liao; Xin Liu; Thomas P. Loughran; István Albert; Réka Albert (PLoS Comput. Biol., 2011)

Inferring domain-domain interactions from protein-protein interactions in the complex network conformation. - Chen Chen; Junfei Zhao; Qiang Huang; Rui-Sheng Wang; Xiang-Sun Zhang (BMC Syst. Biol., 2012)

A combinatorial model and algorithm for globally searching community structure in complex networks. - Xiang-Sun Zhang; Zhen-Ping Li; Rui-Sheng Wang; Yong Wang 001 (J. Comb. Optim., 2012)

Minimal functional routes in directed graphs with dependent edges. - Rui-Sheng Wang; Zhongyao Sun; Réka Albert (Int. Trans. Oper. Res., 2013)

Quantitative function and algorithm for community detection in bipartite networks. - Zhen-Ping Li; Rui-Sheng Wang; Shihua Zhang; Xiang-Sun Zhang (Inf. Sci., 2016)

Uniform integrability of fuzzy variable sequences. - Chunxia Song; Lanzhen Yang; Rui-Sheng Wang (J. Intell. Fuzzy Syst., 2016)

hDirect-MAP: projection-free single-cell modeling of response to checkpoint immunotherapy. - Yong Lu; Gang Xue; Ningbo Zheng; Kun Han; Wenzhong Yang; Rui-Sheng Wang; Ling-Yun Wu; Lance D. Miller; Timothy Pardee; Pierre L. Triozzi; Hui-Wen Lo; Kounosuke Watabe; et al. (Briefings Bioinform., 2022)

Disease Gene Prioritization With Quantum Walks. - Harto Saarinen; Mark Goldsmith; Rui-Sheng Wang; Joseph Loscalzo; Sabrina Maniscalco (CoRR, 2023)