A Nanopublication Framework for Biological Networks using Cytoscape.js. - Jamie P. McCusker; Rui Yan 007; Kusum Solanki; John S. Erickson; Cynthia Chang; Michel Dumontier; Jonathan S. Dordick; Deborah L. McGuinness (ICBO, 2014)

Identifying First Responder Communities Using Social Network Analysis. - John S. Erickson; Katherine Chastain; Zachary Fry; Jamie P. McCusker; Rui Yan 007; Evan W. Patton; Deborah L. McGuinness (ISWC (Posters & Demos), 2014)

Towards Smart Cache Management for Ontology Based, History-Aware Stream Reasoning. - Rui Yan 007; Brenda Praggastis; William P. Smith 001; Deborah L. McGuinness (LISC@ISWC, 2015)

Formalizing the semantics of sea ice. - Ruth E. Duerr; Jamie P. McCusker; Mark A. Parsons; Siri Jodha Singh Khalsa; Peter L. Pulsifer; Cassidy Thompson; Rui Yan 007; Deborah L. McGuinness; Peter Fox 001 (Earth Sci. Informatics, 2015)

Remembering the Important Things: Semantic Importance in Stream Reasoning. - Rui Yan 007; Mark T. Greaves; William P. Smith 001; Deborah L. McGuinness (SR+SWIT@ISWC, 2016)

Towards A Cache-Enabled, Order-Aware, Ontology-Based Stream Reasoning Framework. - Rui Yan 007; Brenda Praggastis; William P. Smith 001; Deborah L. McGuinness (LDOW@WWW, 2016)

Finding melanoma drugs through a probabilistic knowledge graph. - Jamie P. McCusker; Michel Dumontier; Rui Yan 007; Sylvia He; Jonathan S. Dordick; Deborah L. McGuinness (PeerJ Prepr., 2016)

Enhancing stream reasoning by modeling the importance of the streaming data. - Rui Yan 007 (2018)

Reflections on: Finding Melanoma Drugs Through a Probabilistic Knowledge Graph. - Jamie P. McCusker; Michel Dumontier; Rui Yan 007; Sylvia He; Jonathan S. Dordick; Deborah L. McGuinness (JT@ISWC, 2019)