Paean: A parallel transcriptome quantification tool combining gene expression and alternative splicing events using GPU. - Jiefu Li; Jiawen Guan; Jiaqiang Qian; Yanghan Feng; Ruijie Yao; Rui Fan 004; Zefeng Wang (BIBM, 2018)

Deep-learning with synthetic data enables automated picking of cryo-EM particle images of biological macromolecules. - Ruijie Yao; Jiaqiang Qian; Qiang Huang 004 (Bioinform., 2020)

UniFS: Universal Few-Shot Instance Perception with Point Representations. - Sheng Jin 007; Ruijie Yao; Lumin Xu; Wentao Liu 002; Chen Qian 006; Ji Wu 002; Ping Luo 002 (ECCV (29), 2024)

GKGNet: Group K-Nearest Neighbor Based Graph Convolutional Network for Multi-label Image Recognition. - Ruijie Yao; Sheng Jin 007; Lumin Xu; Wang Zeng; Wentao Liu 002; Chen Qian 006; Ping Luo 002; Ji Wu 002 (ECCV (18), 2024)

Noninvasive detection of diabetes in obstructive sleep apnea based on overnight SpO2 signal and deep learning. - Jingyuan You; Juan Li; Ruijie Yao; Jiandong Gao; Ji Wu; Jingying Ye (EMBC, 2024)

Predicting Diabetic Macular Edema Treatment Responses Using OCT: Dataset and Methods of APTOS Competition. - Weiyi Zhang 004; Peranut Chotcomwongse; Yinwen Li; Pusheng Xu; Ruijie Yao; Lianhao Zhou; Yuxuan Zhou; Hui Feng; Qiping Zhou; Xinyue Wang; Shoujin Huang; Zihao Jin; et al. (CoRR, 2025)