Evaluating Chemical Structure Similarity as an Indicator of Cellular Growth Inhibition. - Anders Wallqvist; Ruili Huang; Narmada Thanki; David G. Covell (J. Chem. Inf. Model., 2006)

Chemoinformatic Analysis of NCI Preclinical Tumor Data: Evaluating Compound Efficacy from Mouse Xenograft Data, NCI-60 Screening Data, and Compound Descriptors. - Anders Wallqvist; Ruili Huang; David G. Covell (J. Chem. Inf. Model., 2007)

Predictive Models for Cytochrome P450 Isozymes Based on Quantitative High Throughput Screening Data. - Hongmao Sun; Henrike Veith; Menghang Xia; Christopher P. Austin; Ruili Huang (J. Chem. Inf. Model., 2011)

Structure Based Model for the Prediction of Phospholipidosis Induction Potential of Small Molecules. - Hongmao Sun; Sampada Shahane; Menghang Xia; Christopher P. Austin; Ruili Huang (J. Chem. Inf. Model., 2012)

Application of dynamic topic models to toxicogenomics data. - Mikyung Lee; Zhichao Liu; Ruili Huang; Weida Tong (BMC Bioinform., 2016)

Integrating Drug's Mode of Action into Quantitative Structure-Activity Relationships for Improved Prediction of Drug-Induced Liver Injury. - Leihong Wu; Zhichao Liu; Scott M. Auerbach; Ruili Huang; Minjun Chen; Kristin McEuen; Joshua Xu; Hong Fang; Weida Tong (J. Chem. Inf. Model., 2017)

Bioactivity Signatures of Drugs vs. Environmental Chemicals Revealed by Tox21 High-Throughput Screening Assays. - Deborah K. Ngan; Lin Ye; Leihong Wu; Menghang Xia; Anna Rossoshek; Anton Simeonov; Ruili Huang (Frontiers Big Data, 2019)

Novel Consensus Architecture To Improve Performance of Large-Scale Multitask Deep Learning QSAR Models. - Alexey V. Zakharov; Tongan Zhao; Dac-Trung Nguyen; Tyler Peryea; Timothy Sheils; Adam Yasgar; Ruili Huang; Noel Southall; Anton Simeonov (J. Chem. Inf. Model., 2019)

Group Decision-Making Based on Set Theory and Weighted Geometric Operator with Interval Rough Multiplicative Reciprocal Matrix. - Ruili Huang; Hong-yu Zhang 001; Juan-juan Peng; Jian-Qiang Wang 001; Yue-Jin Lv (Int. J. Fuzzy Syst., 2020)

An Integrated Systems Biology Approach Identifies the Proteasome as A Critical Host Machinery for ZIKV and DENV Replication. - Guang Song; Emily M. Lee; Jianbo Pan; Miao Xu; Hee-Sool Rho; Yichen Cheng; Nadia Whitt; Shu Yang; Jennifer Kouznetsova; Carleen Klumpp-Thomas; Samuel G. Michael; Cedric Moore; et al. (Genom. Proteom. Bioinform., 2021)

Predictive Models to Identify Small Molecule Activators and Inhibitors of Opioid Receptors. - Srilatha Sakamuru; Jinghua Zhao 003; Menghang Xia; Huixiao Hong; Anton Simeonov; Iosif I. Vaisman; Ruili Huang (J. Chem. Inf. Model., 2021)

Profiling Tox21 Bioassay Towards Drug Repurposing for Rare Diseases. - Fang Liu; Yanji Xu; Jaleal Sanjak; Andrew Patt; Ruili Huang; Chunxu Qu; Qian Zhu 003 (AMIA, 2022)

Prediction Method of Electric Energy Metering Device Based on Software-Defined Networking. - Jintao Chen; Binruo Zhu; Fang Zhao; Ruili Huang (Int. J. Inf. Secur. Priv., 2022)

Retro Drug Design: From Target Properties to Molecular Structures. - Yuhong Wang; Samuel G. Michael; Shyh-Ming Yang; Ruili Huang; Kennie Cruz-Gutierrez; Yaqing Zhang; Jinghua Zhao 003; Menghang Xia; Paul Shinn; Hongmao Sun (J. Chem. Inf. Model., 2022)

Corrigendum to "An Integrated Systems Biology Approach Identifies the Proteasome as A Critical Host Machinery for ZIKV and DENV Replication" [Genomics Proteomics Bioinformatics19 (1) (2021) 108-122]. - Guang Song; Emily M. Lee; Jianbo Pan; Miao Xu; Hee-Sool Rho; Yichen Cheng; Nadia Whitt; Shu Yang; Jennifer Kouznetsova; Carleen Klumpp-Thomas; Samuel G. Michael; Cedric Moore; et al. (Genom. Proteom. Bioinform., 2022)

Prediction of Drug Targets based on In Vitro Activity Profiles Toward Drug Repurposing for Rare Diseases. - Binghan Xue; Ruili Huang; Qian Zhu 003; Yanji Xu (BIBM, 2023)

Predictive Models for Human Cytochrome P450 3A7 Selective Inhibitors and Substrates. - Tuan Xu; Md Kabir; Srilatha Sakamuru; Pranav Shah; Elias C. Padilha; Deborah K. Ngan; Menghang Xia; Xin Xu; Anton Simeonov; Ruili Huang (J. Chem. Inf. Model., 2023)

Identification of Potent and Selective Acetylcholinesterase/Butyrylcholinesterase Inhibitors by Virtual Screening. - Tuan Xu; Shuaizhang Li; Andrew J. Li; Jinghua Zhao 003; Srilatha Sakamuru; Wenwei Huang; Menghang Xia; Ruili Huang (J. Chem. Inf. Model., 2023)