SilkDB: a knowledgebase for silkworm biology and genomics. - Jing Wang 003; Qingyou Xia; Ximiao He; Mingtao Dai; Jue Ruan; Jie Chen; Guo Yu; Haifeng Yuan; Yafeng Hu; Ruiqiang Li; Tao Feng; Chen Ye; et al. (Nucleic Acids Res., 2005)

ReAS: Recovery of Ancestral Sequences for Transposable Elements from the Unassembled Reads of a Whole Genome Shotgun. - Ruiqiang Li; Jia Ye; Songgang Li; Jing Wang 003; Yujun Han; Chen Ye; Jian Wang 065; Huanming Yang; Jun Yu 004; Gane Ka-Shu Wong; Jun Wang 004 (PLoS Comput. Biol., 2005)

TreeFam: a curated database of phylogenetic trees of animal gene families. - Heng Li 002; Avril Coghlan; Jue Ruan; Lachlan James M. Coin; Jean-Karim Hériché; Lara Osmotherly; Ruiqiang Li; Tao Liu; Zhang Zhang 002; Lars Bolund; Gane Ka-Shu Wong; Wei-Mou Zheng; et al. (Nucleic Acids Res., 2006)

WEGO: a web tool for plotting GO annotations. - Jia Ye; Lin Fang; Hongkun Zheng; Yong Zhang 036; Jie Chen; Zengjin Zhang; Jing Wang 003; Shengting Li; Ruiqiang Li; Lars Bolund; Jun Wang 004 (Nucleic Acids Res., 2006)

SOAP: short oligonucleotide alignment program. - Ruiqiang Li; Yingrui Li; Karsten Kristiansen; Jun Wang 004 (Bioinform., 2008)

TreeFam: 2008 Update. - Jue Ruan; Heng Li 002; Zhongzhong Chen; Avril Coghlan; Lachlan James M. Coin; Yiran Guo; Jean-Karim Hériché; Yafeng Hu; Karsten Kristiansen; Ruiqiang Li; Tao Liu; Alan Moses; et al. (Nucleic Acids Res., 2008)

High Throughput Short Read Alignment via Bi-directional BWT. - Tak Wah Lam; Ruiqiang Li; Alan Tam; Simon C. K. Wong; Edward Wu; Siu-Ming Yiu (BIBM, 2009)

SOAP2: an improved ultrafast tool for short read alignment. - Ruiqiang Li; Chang Yu; Yingrui Li; Tak Wah Lam; Siu-Ming Yiu; Karsten Kristiansen; Jun Wang 004 (Bioinform., 2009)

The YH database: the first Asian diploid genome database. - Guoqing Li; Lijia Ma; Chao Song; Zhentao Yang; Xiulan Wang; Hui Huang; Yingrui Li; Ruiqiang Li; Xiuqing Zhang; Huanming Yang; Jian Wang 065; Jun Wang 004 (Nucleic Acids Res., 2009)

MetaCluster: unsupervised binning of environmental genomic fragments and taxonomic annotation. - Bin Yang; Yu Peng; Henry C. M. Leung; Siu-Ming Yiu; Junjie Qin; Ruiqiang Li; Francis Y. L. Chin (BCB, 2010)

Evolutionary Transients in the Rice Transcriptome. - Jun Wang 004; Jianguo Zhang; Ruiqiang Li; Hongkun Zheng; Jun Li 051; Yong Zhang 036; Heng Li 002; Peixiang Ni; Songgang Li; Shengting Li; Jingqiang Wang; Dongyuan Liu; et al. (Genom. Proteom. Bioinform., 2010)

SilkDB v2.0: a platform for silkworm (Bombyx mori ) genome biology. - Jun Duan; Ruiqiang Li; Daojun Cheng; Wei Fan; Xingfu Zha; Tingcai Cheng; Yuqian Wu; Jun Wang 004; Kazuei Mita; Zhonghuai Xiang; Qingyou Xia (Nucleic Acids Res., 2010)

A robust and accurate binning algorithm for metagenomic sequences with arbitrary species abundance ratio. - Henry C. M. Leung; Siu-Ming Yiu; Bin Yang; Yu Peng; Yi Wang 042; Zhihua Liu; Jing-Chi Chen; Junjie Qin; Ruiqiang Li; Francis Y. L. Chin (Bioinform., 2011)

Efficient SNP-sensitive alignment and database-assisted SNP calling for low coverage samples. - Ruibang Luo; Chang Yu; Chi-Man Liu; Tak Wah Lam; Thomas K. F. Wong; Siu-Ming Yiu; Ruiqiang Li; Hing-Fung Ting (BCB, 2012)

SOAP3: ultra-fast GPU-based parallel alignment tool for short reads. - Chi-Man Liu; Thomas K. F. Wong; Edward Wu; Ruibang Luo; Siu-Ming Yiu; Yingrui Li; Bingqiang Wang; Chang Yu; Xiaowen Chu 001; Kaiyong Zhao; Ruiqiang Li; Tak Wah Lam (Bioinform., 2012)

Integrative Analysis of Two Cell Lines Derived from a Non-Small-Lung Cancer Patient - A Panomics Approach. - Oleg Mayba; Florian Gnad; Michael Peyton; Fan Zhang 090; Kimberly Walter; Pan Du 006; Melanie A. Huntley; Zhaoshi Jiang; Jinfeng Liu; Peter M. Haverty; Robert Gentleman; Ruiqiang Li; et al. (Pacific Symposium on Biocomputing, 2014)

MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC). - Ruibang Luo; Jeanno Cheung; Edward Wu; Heng Wang; Sze-Hang Chan; Wai-Chun Law; Guangzhu He; Chang Yu; Chi-Man Liu; Dazong Zhou; Yingrui Li; Ruiqiang Li; et al. (BMC Bioinform., 2015)

Applying blockchain for primary financial market: A survey. - Ji Liu; Zheng Xu; Ruiqiang Li; Hang Zhao; Hongbo Jiang 005; Jinhui Yao; Dong Yuan 001; Shiping Chen 001 (IET Blockchain, 2021)

ServiceNet: A Service Network for Peer to Peer. - Ji Liu; Shiping Chen 001; Hang Zhao; Jiyuan Yang; Yu Shi; Ruiqiang Li; Dong Yuan 001 (Int. J. Syst. Serv. Oriented Eng., 2021)

Empowering Visual Artists with Tokenized Digital Assets with NFTs. - Ruiqiang Li; Brian Yecies; Qin Wang 008; Shiping Chen 001; Jun Shen 001 (CoRR, 2024)

Are NFTs Ready to Keep Australian Artists Engaged? - Ruiqiang Li; Brian Yecies; Qin Wang 008; Shiping Chen 001; Jun Shen 001 (CoRR, 2025)

Understanding NFTs from EIP Standards. - Minfeng Qi; Qin Wang 008; Guangsheng Yu; Ruiqiang Li; Victor Zhou; Shiping Chen 001 (CoRR, 2025)