McTwo: a two-step feature selection algorithm based on maximal information coefficient. - Ruiquan Ge; Manli Zhou; Youxi Luo; Qinghan Meng; Guoqin Mai; Dongli Ma; Guoqing Wang; Fengfeng Zhou (BMC Bioinform., 2016)

MUSTv2: An Improved De Novo Detection Program for Recently Active Miniature Inverted Repeat Transposable Elements (MITEs). - Ruiquan Ge; Guoqin Mai; Ruochi Zhang; Xundong Wu; Qing Wu; Fengfeng Zhou (J. Integr. Bioinform., 2017)

hMuLab: A Biomedical Hybrid MUlti-LABel Classifier Based on Multiple Linear Regression. - Pu Wang; Ruiquan Ge; Xuan Xiao; Manli Zhou; Fengfeng Zhou (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

CTF-PSF: Coupled Tensor Factorization with Partially Shared Factors. - Qing Wu 008; Xingfei Li; Quan Do; Jin Fan; Ruiquan Ge; Jie Wang 013 (IJCNN, 2018)

iBQPSO: an Improved BQPSO Algorithm for Feature Selection. - Qing Wu; Yuanfeng Shen; Zheping Ma; Jin Fan; Ruiquan Ge (IJCNN, 2018)

Improved Coupled Tensor Factorization with Its Applications in Health Data Analysis. - Qing Wu 008; Jie Wang 013; Jin Fan; Gang Xu 001; Jia Wu 001; Blake W. Johnson; Xingfei Li; Quan Do; Ruiquan Ge (Complex., 2019)

Prediction of anticancer peptides with dictionary learning method. - Ruiquan Ge; Xiaomao Fan; Pu Wang (BIBM, 2020)

ProFPred: a two-step protein function prediction model based on sequence and evolutionary information. - Ruiquan Ge; Guanwen Feng; Pu Wang; Qiguang Miao (BIBM, 2020)

Prediction of Chronic Diseases With Multi-Label Neural Network. - Ruiquan Ge; Renfeng Zhang; Pu Wang (IEEE Access, 2020)

A Virtual End-to-End Learning System for Robot Navigation Based on Temporal Dependencies. - Yanqiu Zhang; Ruiquan Ge; Lei Lyu 001; Jinling Zhang; Chen Lyu 001; Xiaojuan Yang (IEEE Access, 2020)

SuccSPred: Succinylation Sites Prediction Using Fused Feature Representation and Ranking Method. - Ruiquan Ge; Yizhang Luo; Guanwen Feng; Gangyong Jia; Hua Zhang; Chong Xu; Gang Xu 001; Pu Wang (ISBRA, 2021)

MD-UNET: Multi-input dilated U-shape neural network for segmentation of bladder cancer. - Ruiquan Ge; Huihuang Cai; Xin Yuan; Feiwei Qin; Yan Huang; Pu Wang; Lei Lyu (Comput. Biol. Chem., 2021)

MSF-SleepNet: Multi-Stream Fusion Network with Contrastive Learning for Sleep Stage Classification. - Jingrui Chen; Yujie Li; Jing Xiao 005; Ruiquan Ge; Wenjun Ma; Xiaomao Fan (BIBM, 2022)

Light Annotation Fine Segmentation: Histology Image Segmentation Based on VGG Fusion with Global Normalisation CAM. - Yilong Li; Yaqi Wang 002; Le Dong; Juan Ye; Linyan Wang; Ruiquan Ge; Huiyu Zhou 001; Qianni Zhang (CMMCA@MICCAI, 2022)

ME-ACP: Multi-view neural networks with ensemble model for identification of anticancer peptides. - Guanwen Feng; Hang Yao 001; Chaoneng Li; Ruyi Liu; Rungen Huang; Xiaopeng Fan; Ruiquan Ge; Qiguang Miao (Comput. Biol. Medicine, 2022)

CDNet: Contrastive Disentangled Network for Fine-Grained Image Categorization of Ocular B-Scan Ultrasound. - Ruilong Dan; Yunxiang Li; Yijie Wang; Gangyong Jia; Ruiquan Ge; Juan Ye; Qun Jin; Yaqi Wang 002 (CoRR, 2022)

SuccSPred2.0: A Two-Step Model to Predict Succinylation Sites Based on Multifeature Fusion and Selection Algorithm. - Yixiao Xia; Minchao Jiang; Yizhang Luo; Guanwen Feng; Gangyong Jia; Hua Zhang; Pu Wang; Ruiquan Ge (J. Comput. Biol., 2022)

GCS-ICHNet: Assessment of Intracerebral Hemorrhage Prognosis using Self-Attention with Domain Knowledge Integration. - Xuhao Shan; Xinyang Li; Ruiquan Ge; Shibin Wu; Ahmed Elazab; Jichao Zhu; Lingyan Zhang; Gangyong Jia; Qingying Xiao; Xiang Wan; Changmiao Wang (BIBM, 2023)

UWAT-GAN: Fundus Fluorescein Angiography Synthesis via Ultra-Wide-Angle Transformation Multi-scale GAN. - Zhaojie Fang; Zhanghao Chen; Pengxue Wei; Wangting Li; Shaochong Zhang; Ahmed Elazab; Gangyong Jia; Ruiquan Ge; Changmiao Wang (MICCAI (7), 2023)

MPSurv: End-to-End Multi-model Pseudo-Label Model for Brain Tumor Survival Prediction with Population Information Integration. - Qingsong Wang; Xin Lin; Ruiquan Ge; Ahmed Elazab; Xiangyang Hu; Jionghao Cheng; Yuqing Peng; Xiang Wan; Changmiao Wang (CMMCA@MICCAI, 2023)

TTMFN: Two-stream Transformer-based Multimodal Fusion Network for Survival Prediction. - Ruiquan Ge; Xiangyang Hu; Rungen Huang; Gangyong Jia; Yaqi Wang; Renshu Gu; Changmiao Wang; Elazab Ahmed; Linyan Wang; Juan Ye; Ye Li (CoRR, 2023)

CDNet: Contrastive Disentangled Network for Fine-Grained Image Categorization of Ocular B-Scan Ultrasound. - Ruilong Dan; Yunxiang Li; Yijie Wang; Xiaodiao Chen; Gangyong Jia; Shuai Wang 003; Ruiquan Ge; Guiping Qian; Qun Jin; Juan Ye; Yaqi Wang 002 (IEEE J. Biomed. Health Informatics, 2023)

Fine-grained imbalanced leukocyte classification with global-local attention transformer. - Ben Chen; Feiwei Qin; Yanli Shao; Jin Cao; Yong Peng 001; Ruiquan Ge (J. King Saud Univ. Comput. Inf. Sci., 2023)

CCLNet: Causal and Contrastive Learning Framework for Enhanced Pulmonary Embolism Detection. - Zhipeng Wang; Ruiquan Ge; Jianxun Yu; Feiwei Qin; Yuan Tian; Nannan Li; Wenwen Min; Ahmed Elazab; Changmiao Wang (BIBM, 2024)

ICH-SCNet: Intracerebral Hemorrhage Segmentation and Prognosis Classification Network Using CLIP-guided SAM mechanism. - Xinlei Yu; Ahmed Elazab; Ruiquan Ge; Hui Jin; Xinchen Jiang; Gangyong Jia; Qing Wu 008; Qinglei Shi; Changmiao Wang (BIBM, 2024)

Infrared Image Super-Resolution via Lightweight Information Split Network. - Shijie Liu; Kang Yan; Feiwei Qin; Changmiao Wang; Ruiquan Ge; Kai Zhang 008; Jie Huang; Yong Peng 001; Jin Cao (ICIC (8), 2024)

Make an Image Move: Few-Shot Based Video Generation Guided by CLIP. - Yonglong Huang; Cheng Yu; Nannan Li; Fuqin Deng; Ruiquan Ge; Changmiao Wang (ICPR (6), 2024)

BS-Diff: Effective Bone Suppression Using Conditional Diffusion Models From Chest X-Ray Images. - Zhanghao Chen; Yifei Sun 005; Ruiquan Ge; Wenjian Qin; Cheng Pan; Wenming Deng; Zhou Liu; Wenwen Min; Ahmed Elazab; Xiang Wan; Changmiao Wang (ISBI, 2024)

PE-MVCNET: Multi-View and Cross-Modal Fusion Network for Pulmonary Embolism Prediction. - Zhaoxin Guo; Zhipeng Wang; Ruiquan Ge; Jianxun Yu; Feiwei Qin; Yuan Tian; Yuqing Peng; Yonghong Li; Changmiao Wang (ISBI, 2024)

ICHPro: Intracerebral Hemorrhage Prognosis Classification via Joint-Attention Fusion-Based 3D Cross-Modal Network. - Xinlei Yu; Xinyang Li; Ruiquan Ge; Shibin Wu; Ahmed Elazab; Jichao Zhu; Lingyan Zhang; Gangyong Jia; Taosheng Xu; Xiang Wan; Changmiao Wang (ISBI, 2024)

TC-DiffRecon: Texture Coordination MRI Reconstruction Method Based on Diffusion Model and Modified MF-UNet Method. - Chenyan Zhang; Yifei Chen; Zhenxiong Fan; Yiyu Huang; Wenchao Weng; Ruiquan Ge; Dong Zeng; Changmiao Wang (ISBI, 2024)

CircMAN: Multi-channel Attention Networks Based on Feature Fusion for CircRNA-Binding Protein Site Prediction. - Huiliang Luo; Guojian Deng; Riqian Hu; Ruiquan Ge; Feiwei Qin; Changmiao Wang (ISBRA (1), 2024)

VQ-NeRV: A Vector Quantized Neural Representation for Videos. - Yunjie Xu; Xiang Feng; Feiwei Qin; Ruiquan Ge; Yong Peng 001; Changmiao Wang (CoRR, 2024)

TC-KANRecon: High-Quality and Accelerated MRI Reconstruction via Adaptive KAN Mechanisms and Intelligent Feature Scaling. - Ruiquan Ge; Xiao Yu; Yifei Chen; Fan Jia; Shenghao Zhu; Guanyu Zhou; Yiyu Huang; Chenyan Zhang; Dong Zeng; Changmiao Wang; Qiegen Liu; Shanzhou Niu (CoRR, 2024)

BS-LDM: Effective Bone Suppression in High-Resolution Chest X-Ray Images with Conditional Latent Diffusion Models. - Yifei Sun 005; Zhanghao Chen; Hao Zheng; Wenming Deng; Jin Liu; Wenwen Min; Ahmed Elazab; Xiang Wan; Changmiao Wang; Ruiquan Ge (CoRR, 2024)

HybAVPnet: A Novel Hybrid Network Architecture for Antiviral Peptides Prediction. - Ruiquan Ge; Yixiao Xia; Minchao Jiang; Gangyong Jia; Xiaoyang Jing; Ye Li 002; Yunpeng Cai (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)

TDFFM: Transformer and Deep Forest Fusion Model for Predicting Coronavirus 3C-Like Protease Cleavage Sites. - Qingsong Wang; Ruiquan Ge; Changmiao Wang; Ahmed Elazab; Qiming Fang; Renfeng Zhang (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)

Sketch-Supervised Histopathology Tumour Segmentation: Dual CNN-Transformer With Global Normalised CAM. - Yilong Li; Linyan Wang; Xingru Huang; Yaqi Wang 002; Le Dong; Ruiquan Ge; Huiyu Zhou 001; Juan Ye; Qianni Zhang (IEEE J. Biomed. Health Informatics, 2024)

Mmy-net: a multimodal network exploiting image and patient metadata for simultaneous segmentation and diagnosis. - Renshu Gu; Yueyu Zhang; Lisha Wang; Dechao Chen; Yaqi Wang 002; Ruiquan Ge; Zicheng Jiao; Juan Ye; Gangyong Jia; Linyan Wang (Multim. Syst., 2024)

LKFormer: large kernel transformer for infrared image super-resolution. - Feiwei Qin; Kang Yan; Changmiao Wang; Ruiquan Ge; Yong Peng 001; Kai Zhang 008 (Multim. Tools Appl., 2024)

UWAFA-GAN: Ultra-Wide-Angle Fluorescein Angiography Transformation via Multi-Scale Generation and Registration Enhancement. - Ruiquan Ge; Zhaojie Fang; Pengxue Wei; Zhanghao Chen; Hongyang Jiang 001; Ahmed Elazab; Wangting Li; Xiang Wan; Shaochong Zhang; Changmiao Wang (IEEE J. Biomed. Health Informatics, 2024)

Automated molecular structure segmentation from documents using ChemSAM. - Bowen Tang; Zhangming Niu; Xiaofeng Wang; Junjie Huang; Chao Ma; Jing Peng; Yinghui Jiang; Ruiquan Ge; Hongyu Hu; Luhao Lin; Guang Yang 006 (J. Cheminformatics, 2024)

ITCFN: Incomplete Triple-Modal Co-Attention Fusion Network for Mild Cognitive Impairment Conversion Prediction. - Xiangyang Hu; Xiangyu Shen; Yifei Sun 005; Xuhao Shan; Wenwen Min; Liyilei Su; Xiaomao Fan; Ahmed Elazab; Ruiquan Ge; Changmiao Wang; Xiaopeng Fan (ISBI, 2025)

CSF-NET: Cross-Modal Spatiotemporal Fusion Network for Pulmonary Nodule Malignancy Predicting. - Yin Shen; Zhaojie Fang; Ke Zhuang; Guanyu Zhou; Xiao Yu; Yucheng Zhao; Yuan Tian; Ruiquan Ge; Changmiao Wang; Xiaopeng Fan; Ahmed Elazab (ISBI, 2025)

TMI-CLNet: Triple-Modal Interaction Network for Chronic Liver Disease Prognosis from Imaging, Clinical, and Radiomic Data Fusion. - Linglong Wu; Xuhao Shan; Ruiquan Ge; Ruoyu Liang; Chi Zhang; Yonghong Li; Ahmed Elazab; Huoling Luo; Yunbi Liu; Changmiao Wang (ISBI, 2025)

LPUWF-LDM: Enhanced latent diffusion model for precise late-phase UWF-FA generation on limited dataset. - Zhaojie Fang; Xiao Yu; Guanyu Zhou; Ke Zhuang; Yifei Chen; Ruiquan Ge; Changmiao Wang; Gangyong Jia; Qing Wu 008; Juan Ye; Maimaiti Nuliqiman; Peifang Xu; et al. (Expert Syst. Appl., 2025)

InfraFFN: A Feature Fusion Network leveraging dual-path convolution and self-attention for infrared image super-resolution. - Feiwei Qin; Zhengwei Shen; Ruiquan Ge; Kai Zhang 008; Fei Lin; Yeru Wang; Juan Manuel Górriz; Ahmed Elazab; Changmiao Wang (Knowl. Based Syst., 2025)

ICH-PRNet: a cross-modal intracerebral haemorrhage prognostic prediction method using joint-attention interaction mechanism. - Xinlei Yu; Ahmed Elazab; Ruiquan Ge; Jichao Zhu; Lingyan Zhang; Gangyong Jia; Qing Wu 008; Xiang Wan; Lihua Li; Changmiao Wang (Neural Networks, 2025)

3D-Telepathy: Reconstructing 3D Objects from EEG Signals. - Yuxiang Ge; Jionghao Cheng; Ruiquan Ge; Zhaojie Fang; Gangyong Jia; Xiang Wan; Nannan Li; Ahmed Elazab; Changmiao Wang (CoRR, 2025)

CRISP-SAM2: SAM2 with Cross-Modal Interaction and Semantic Prompting for Multi-Organ Segmentation. - Xinlei Yu; Chanmiao Wang; Hui Jin; Ahmed Elazab; Gangyong Jia; Xiang Wan; Changqing Zou; Ruiquan Ge (CoRR, 2025)

Small Lesions-aware Bidirectional Multimodal Multiscale Fusion Network for Lung Disease Classification. - Jianxun Yu; Ruiquan Ge; Zhipeng Wang; Cheng Yang; Chenyu Lin; Xianjun Fu; Jikui Liu; Ahmed Elazab; Changmiao Wang (CoRR, 2025)

Towards interpretable sleep stage classification with a multi-stream fusion network. - Jingrui Chen; Xiaomao Fan; Ruiquan Ge; Jing Xiao 005; Ruxin Wang 001; Wenjun Ma; Ye Li 002 (BMC Medical Informatics Decis. Mak., 2025)