MULTICOMP: a program for preparing sequence data for phylogenetic analysis. - P. R. Reeves; Leslie Farnell; Ruiting Lan (Comput. Appl. Biosci., 1994)

In silico prioritisation of candidate genes for prokaryotic gene function discovery: an application of phylogenetic profiles. - Frank P. Y. Lin; Enrico W. Coiera; Ruiting Lan; Vitali Sintchenko (BMC Bioinform., 2009)

Conditions for the Evolution of Gene Clusters in Bacterial Genomes. - Sara Ballouz; Andrew R. Francis; Ruiting Lan; Mark M. Tanaka (PLoS Comput. Biol., 2010)

SnpFilt: A pipeline for reference-free assembly-based identification of SNPs in bacterial genomes. - Carmen H. S. Chan; Sophie Octavia; Vitali Sintchenko; Ruiting Lan (Comput. Biol. Chem., 2016)

MGTdb: a web service and database for studying the global and local genomic epidemiology of bacterial pathogens. - Sandeep Kaur; Michael Payne; Lijuan Luo; Sophie Octavia; Mark M. Tanaka; Vitali Sintchenko; Ruiting Lan (Database J. Biol. Databases Curation, 2022)