A Kernel-Based Case Retrieval Algorithm with Application to Bioinformatics. - Yan Fu; Qiang Yang 001; Charles X. Ling; Haipeng Wang; Dequan Li; Ruixiang Sun 001; Hu Zhou; Rong Zeng; Yiqiang Chen 001; Simin He 001; Wen Gao 001 (PRICAI, 2004)

Exploiting the kernel trick to correlate fragment ions for peptide identification via tandem mass spectrometry. - Yan Fu; Qiang Yang 001; Ruixiang Sun 001; Dequan Li; Rong Zeng; Charles X. Ling; Wen Gao 001 (Bioinform., 2004)

A block-based support vector machine approach to the protein homology prediction task in KDD Cup 2004. - Yan Fu; Ruixiang Sun 001; Qiang Yang 001; Simin He 001; Chunli Wang; Haipeng Wang; Shiguang Shan; Junfa Liu; Wen Gao 001 (SIGKDD Explor., 2004)

pFind: a novel database-searching software system for automated peptide and protein identification via tandem mass spectrometry. - Dequan Li; Yan Fu; Ruixiang Sun 001; Charles X. Ling; Yonggang Wei; Hu Zhou; Rong Zeng; Qiang Yang 001; Simin He 001; Wen Gao 001 (Bioinform., 2005)

Support vector machine with orthogonal Chebyshev kernel. - Ning Ye; Ruixiang Sun 001; Yingan Liu; Lin Cao (ICPR (2), 2006)

An SVM Scorer for More Sensitive and Reliable Peptide Identification via Tandem Mass Spectrometry. - Haipeng Wang; Yan Fu; Ruixiang Sun 001; Simin He 001; Rong Zeng; Wen Gao 001 (Pacific Symposium on Biocomputing, 2006)

IndexToolkit: an open source toolbox to index protein databases for high-throughput proteomics. - Dequan Li; Wen Gao 001; Charles X. Ling; Xiaobiao Wang; Ruixiang Sun 001; Simin He 001 (Bioinform., 2006)

Mining Tandem Mass Spectral Data to Develop a More Accurate Mass Error Model for Peptide Identification. - Yan Fu; Wen Gao 001; Simin He 001; Ruixiang Sun 001; Hu Zhou; Rong Zeng (Pacific Symposium on Biocomputing, 2007)

Efficient discovery of abundant post-translational modifications and spectral pairs using peptide mass and retention time differences. - Yan Fu; Wei Jia 001; Zhuang Lu; Haipeng Wang; Zuofei Yuan; Hao Chi; You Li; Liyun Xiu; Wenping Wang; Chao Liu; Leheng Wang; Ruixiang Sun 001; et al. (BMC Bioinform., 2009)

Open MS/MS spectral library search to identify unanticipated post-translational modifications and increase spectral identification rate. - Ding Ye; Yan Fu; Ruixiang Sun 001; Haipeng Wang; Zuofei Yuan; Hao Chi; Si-Min He 001 (Bioinform., 2010)

Speeding up tandem mass spectrometry-based database searching by longest common prefix. - Chen Zhou; Hao Chi; Leheng Wang; You Li; Yan-Jie Wu; Yan Fu; Ruixiang Sun 001; Si-Min He 001 (BMC Bioinform., 2010)