Transfer Learning on Heterogenous Feature Spaces via Spectral Transformation. - Xiaoxiao Shi; Qi Liu 019; Wei Fan 001; Philip S. Yu; Ruixin Zhu (ICDM, 2010)

A new protein-ligand binding sites prediction method based on the integration of protein sequence conservation information. - Tianli Dai; Qi Liu 019; Jun Gao; Zhiwei Cao; Ruixin Zhu (BMC Bioinform., 2011)

Multi-target QSAR Modelling in the Analysis and Design of HIV-HCV Co-Inhibitors : An In-silico Study. - Qi Liu 019; Han Zhou; Lin Liu 001; Xi Chen; Ruixin Zhu; Zhi-Wei Cao (BMC Bioinform., 2011)

Discrimination of Approved Drugs from Experimental Drugs by Learning Methods. - Kailin Tang; Ruixin Zhu; Yixue Li; Zhi-Wei Cao (BMC Bioinform., 2011)

HIT: linking herbal active ingredients to targets. - Hao Ye; Li Ye; Hong Kang; Duanfeng Zhang; Lin Tao; Kailin Tang; Xueping Liu; Ruixin Zhu; Qi Liu 019; Yuzong Chen 002; Yixue Li; Zhi-Wei Cao (Nucleic Acids Res., 2011)

Integrated QSAR study for inhibitors of hedgehog signal pathway against multiple cell lines: a collaborative filtering method. - Jun Gao; Dongsheng Che; Vincent Wenchen Zheng; Ruixin Zhu; Qi Liu 019 (BMC Bioinform., 2012)

Screening of selective histone deacetylase inhibitors by proteochemometric modeling. - Dingfeng Wu; Qi Huang; Yida Zhang; Qingchen Zhang; Qi Liu 019; Jun Gao; Zhi-Wei Cao; Ruixin Zhu (BMC Bioinform., 2012)

Quantitatively integrating molecular structure and bioactivity profile evidence into drug-target relationship analysis. - Tianlei Xu; Ruixin Zhu; Qi Liu 019; Zhi-Wei Cao (BMC Bioinform., 2012)

Virtual Drug Screen Schema Based on Multiview Similarity Integration and Ranking Aggregation. - Hong Kang; Zhen Sheng; Ruixin Zhu; Qi Huang; Qi Liu 019; Zhiwei Cao (J. Chem. Inf. Model., 2012)

Towards a bioinformatics analysis of anti-Alzheimer's herbal medicines from a target network perspective. - Yi Sun; Ruixin Zhu; Hao Ye; Kailin Tang; Jing Zhao 003; Yujia Chen; Qi Liu 019; Zhiwei Cao (Briefings Bioinform., 2013)

HIM-herbal ingredients in-vivo metabolism database. - Hong Kang; Kailin Tang; Qi Liu 019; Yi Sun; Qi Huang; Ruixin Zhu; Jun Gao; Duanfeng Zhang; Chenggang Huang; Zhiwei Cao (J. Cheminformatics, 2013)

Reconsideration of in silico siRNA design from a perspective of heterogeneous data integration: problems and solutions. - Qi Liu 019; Han Zhou; Ruixin Zhu; Ying Xu 001; Zhiwei Cao (Briefings Bioinform., 2014)

iPEAP: integrating multiple omics and genetic data for pathway enrichment analysis. - Haoqi Sun; Haiping Wang 001; Ruixin Zhu; Kailin Tang; Qin Gong; Juan Cui; Zhiwei Cao; Qi Liu 019 (Bioinform., 2014)

SEPPA 2.0 - more refined server to predict spatial epitope considering species of immune host and subcellular localization of protein antigen. - Tao Qi; Tianyi Qiu; Qingchen Zhang; Kailin Tang; Yangyang Fan; Jingxuan Qiu; Dingfeng Wu; Wei Zhang; Yanan Chen; Jun Gao; Ruixin Zhu; Zhiwei Cao (Nucleic Acids Res., 2014)

When drug discovery meets web search: Learning to Rank for ligand-based virtual screening. - Wei Zhang; Lijuan Ji; Yanan Chen; Kailin Tang; Haiping Wang 001; Ruixin Zhu; Wei Jia; Zhiwei Cao; Qi Liu 019 (J. Cheminformatics, 2015)

bSiteFinder, an improved protein-binding sites prediction server based on structural alignment: more accurate and less time-consuming. - Jun Gao; Qingchen Zhang; Min Liu 020; Lixin Zhu; Dingfeng Wu; Zhiwei Cao; Ruixin Zhu (J. Cheminformatics, 2016)

Connection Map for Compounds (CMC): A Server for Combinatorial Drug Toxicity and Efficacy Analysis. - Lei Liu 033; Maria Tsompana; Yong Wang; Dingfeng Wu; Lixin Zhu; Ruixin Zhu (J. Chem. Inf. Model., 2016)

The recent progress in proteochemometric modelling: focusing on target descriptors, cross-term descriptors and application scope. - Tianyi Qiu; Jingxuan Qiu; Jun Feng; Dingfeng Wu; Yiyan Yang; Kailin Tang; Zhiwei Cao; Ruixin Zhu (Briefings Bioinform., 2017)

Dr AFC: drug repositioning through anti-fibrosis characteristic. - Dingfeng Wu; Wenxing Gao; Xiaoyi Li; Chuan Tian; Na Jiao; Sa Fang; Jing Xiao; Zhifeng Xu; Lixin Zhu; Guoqing Zhang 006; Ruixin Zhu (Briefings Bioinform., 2021)

CyclicPepedia: a knowledge base of natural and synthetic cyclic peptides. - Lei Liu 033; Liu Yang; Suqi Cao; Zhigang Gao; Bin Yang; Guoqing Zhang 006; Ruixin Zhu; Dingfeng Wu (Briefings Bioinform., 2024)

cyclicpeptide: a Python package for cyclic peptide drug design. - Liu Yang; Suqi Cao; Lei Liu 033; Ruixin Zhu; Dingfeng Wu (Briefings Bioinform., 2024)

NAFLDkb: A Knowledge Base and Platform for Drug Development against Nonalcoholic Fatty Liver Disease. - Tingjun Xu; Wenxing Gao; Lixin Zhu; Wanning Chen; Chaoqun Niu; Wenjing Yin; Liangxiao Ma; Xinyue Zhu; Yunchao Ling; Sheng Gao; Lei Liu 033; Na Jiao; et al. (J. Chem. Inf. Model., 2024)