Quantifying Intensities of Transcription Factor-DNA Binding by Learning From an Ensemble of Protein Binding Microarrays. - Lijun Quan; Jie Mei; Ruji He; Xiaoyu Sun 006; Liangpeng Nie; Kailong Li; Qiang Lyu (IEEE J. Biomed. Health Informatics, 2021)

TransPPMP: predicting pathogenicity of frameshift and non-sense mutations by a Transformer based on protein features. - Liangpeng Nie; Lijun Quan; Tingfang Wu; Ruji He; Qiang Lyu (Bioinform., 2022)

Learning Useful Representations of DNA Sequences From ChIP-Seq Datasets for Exploring Transcription Factor Binding Specificities. - Lijun Quan; Xiaoyu Sun 006; Jian Wu; Jie Mei; Liqun Huang; Ruji He; Liangpeng Nie; Yu Chen 064; Qiang Lyu (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)