Ncrna Consensus Secondary Structure Derivation Using Grammar Strings. - Rujira Achawanantakun; Yanni Sun; Seyedeh Shohreh Takyar (J. Bioinform. Comput. Biol., 2011)

ChainKnot: a comparative H-type pseudoknot prediction tool using multiple ab initio folding tools. - Jikai Lei; Prapaporn Techa-angkoon; Yanni Sun; Rujira Achawanantakun (BCB, 2013)

Shape and secondary structure prediction for ncRNAs including pseudoknots based on linear SVM. - Rujira Achawanantakun; Yanni Sun (BMC Bioinform., 2013)

LncRNA-ID: Long non-coding RNA IDentification using balanced random forests. - Rujira Achawanantakun; Jiao Chen 002; Yanni Sun; Yuan Zhang (Bioinform., 2015)