Semantic Annotation of Biomedical Literature Using Google. - Rune Sætre; Amund Tveit; Tonje Strommen Steigedal; Astrid Lægreid (ICCSA (3), 2005)

ProtChew: Automatic Extraction of Protein Names from Biomedical Literature. - Amund Tveit; Rune Sætre; Astrid Lægreid; Tonje Strommen Steigedal (ICDE Workshops, 2005)

gProt: Annotating Protein Interactions Using Google and Gene Ontology. - Rune Sætre; Amund Tveit; Martin Thorsen Ranang; Tonje Strommen Steigedal; Liv Thommesen; Kamilla Stunes; Astrid Lægreid (KES (3), 2005)

GeneTUC, GENIA and Google: Natural Language Understanding in Molecular Biology Literature. - Rune Sætre; Harald Søvik; Tore Amble; Yoshimasa Tsuruoka (Trans. Comp. Sys. Biology, 2006)

Syntactic Features for Protein-Protein Interaction Extraction. - Rune Sætre; Kenji Sagae; Jun'ichi Tsujii (LBM (Short Papers), 2007)

Task-oriented Evaluation of Syntactic Parsers and Their Representations. - Yusuke Miyao; Rune Sætre; Kenji Sagae; Takuya Matsuzaki; Jun'ichi Tsujii (ACL, 2008)

Evaluating the Effects of Treebank Size in a Practical Application for Parsing. - Kenji Sagae; Yusuke Miyao; Rune Saetre; Jun'ichi Tsujii (SETQALNLP, 2008)

Raising the Compatibility of Heterogeneous Annotations: A Case Study on. - Yue Wang 040; Kazuhiro Yoshida; Jin-Dong Kim; Rune Saetre; Jun'ichi Tsujii (BioNLP, 2008)

Towards Data and Goal Oriented Analysis: Tool Inter-operability and Combinatorial Comparison. - Yoshinobu Kano; Ngan L. T. Nguyen; Rune Sætre; Kazuhiro Yoshida; Keiichiro Fukamachi; Yusuke Miyao; Yoshimasa Tsuruoka; Sophia Ananiadou; Jun'ichi Tsujii (IJCNLP, 2008)

Connecting Text Mining and Pathways using the PathText Resource. - Rune Sætre; Brian Kemper; Kanae Oda; Naoaki Okazaki; Yukiko Matsuoka; Norihiro Kikuchi; Hiroaki Kitano; Yoshimasa Tsuruoka; Sophia Ananiadou; Jun'ichi Tsujii (LREC, 2008)

Filling the Gaps Between Tools and Users: A Tool Comparator, Using Protein-Protein Interactions as an Example. - Yoshinobu Kano; Ngan L. T. Nguyen; Rune Sætre; Kazuhiro Yoshida; Yusuke Miyao; Yoshimasa Tsuruoka; Yuichiroh Matsubayashi; Sophia Ananiadou; Jun'ichi Tsujii (Pacific Symposium on Biocomputing, 2008)

From Protein-Protein Interaction to Molecular Event Extraction. - Rune Sætre; Makoto Miwa; Kazuhiro Yoshida; Jun'ichi Tsujii (BioNLP@HLT-NAACL (Shared Task), 2009)

A Rich Feature Vector for Protein-Protein Interaction Extraction from Multiple Corpora. - Makoto Miwa; Rune Sætre; Yusuke Miyao; Jun'ichi Tsujii (EMNLP, 2009)

Evaluating contributions of natural language parsers to protein-protein interaction extraction. - Yusuke Miyao; Kenji Sagae; Rune Sætre; Takuya Matsuzaki; Jun'ichi Tsujii (Bioinform., 2009)

Investigating heterogeneous protein annotations toward cross-corpora utilization. - Yue Wang 040; Jin-Dong Kim; Rune Sætre; Sampo Pyysalo; Jun'ichi Tsujii (BMC Bioinform., 2009)

Protein-protein interaction extraction by leveraging multiple kernels and parsers. - Makoto Miwa; Rune Sætre; Yusuke Miyao; Jun'ichi Tsujii (Int. J. Medical Informatics, 2009)

Entity-Focused Sentence Simplification for Relation Extraction. - Makoto Miwa; Rune Sætre; Yusuke Miyao; Jun'ichi Tsujii (COLING, 2010)

Medie and Info-pubmed: 2010 update. - Tomoko Ohta; Takuya Matsuzaki; Naoaki Okazaki; Makoto Miwa; Rune Sætre; Sampo Pyysalo; Jun'ichi Tsujii (BMC Bioinform., 2010)

Event Extraction with Complex Event Classification Using Rich Features. - Makoto Miwa; Rune Sætre; Jin-Dong Kim; Jun'ichi Tsujii (J. Bioinform. Comput. Biol., 2010)

Improving the Inter-Corpora Compatibility for protein Annotations. - Yue Wang 040; Jin-Dong Kim; Rune Sætre; Sampo Pyysalo; Tomoko Ohta; Jun'ichi Tsujii (J. Bioinform. Comput. Biol., 2010)

Extracting Protein Interactions from Text with the Unified AkaneRE Event Extraction System. - Rune Sætre; Kazuhiro Yoshida; Makoto Miwa; Takuya Matsuzaki; Yoshinobu Kano; Jun'ichi Tsujii (IEEE ACM Trans. Comput. Biol. Bioinform., 2010)

Poster: Analysis of gene ranking algorithms with extraction of relevant biomedical concepts from PubMed publications. - Simon Kocbek; Rune Sætre; Gregor Stiglic; Jin-Dong Kim; Igor Pernek; Yoshimasa Tsuruoka; Peter Kokol; Sophia Ananiadou; Jun'ichi Tsujii (ICCABS, 2011)

Towards Ontology-Driven End-User Composition of Personalized Mobile Services. - Rune Sætre; Mohammad Ullah Khan; Erlend Stav; Alfredo Perez Fernandez; Peter Herrmann; Jon Atle Gulla (NLDB, 2011)

Terminological resources for text mining over biomedical scientific literature. - Fabio Rinaldi 001; Kaarel Kaljurand; Rune Sætre (Artif. Intell. Medicine, 2011)

AGRA: analysis of gene ranking algorithms. - Simon Kocbek; Rune Sætre; Gregor Stiglic; Jin-Dong Kim; Igor Pernek; Yoshimasa Tsuruoka; Peter Kokol; Sophia Ananiadou; Jun'ichi Tsujii (Bioinform., 2011)

BioCreative III interactive task: an overview. - Cecilia N. Arighi; Phoebe M. Roberts; Shashank Agarwal; Sanmitra Bhattacharya; Gianni Cesareni; Andrew Chatr-aryamontri; Simon Clematide; Pascale Gaudet; Michelle G. Giglio; Ian Harrow; Eva Huala; Martin Krallinger; et al. (BMC Bioinform., 2011)

U-Compare bio-event meta-service: compatible BioNLP event extraction services. - Yoshinobu Kano; Jari Björne; Filip Ginter; Tapio Salakoski; Ekaterina Buyko; Udo Hahn; K. Bretonnel Cohen; Karin Verspoor; Christophe Roeder; Lawrence E. Hunter; Halil Kilicoglu; Sabine Bergler; et al. (BMC Bioinform., 2011)

Bio-molecular Event Extraction with Markov Logic. - Sebastian Riedel 001; Rune Sætre; Hong-Woo Chun; Toshihisa Takagi; Jun'ichi Tsujii (Comput. Intell., 2011)

A Multiple Platform Approach to Building a Bus Route Information System for Mobile Devices. - Runar Andersstuen; Trond Bøe Engell; Rune Sætre; Björn Gambäck (IICS, 2012)

Context-Awareness and Real-Time Information in an Intelligent Smartphone Application. - Christoffer Jun Marcussen; Lars Moland Eliassen; Rune Sætre; Björn Gambäck (IICS, 2012)

Using Meta-modelling for Construction of an End-User Development Framework. - Erlend Stav; Jacqueline Floch; Mohammad Ullah Khan; Rune Sætre (IS-EUD, 2013)

Visual exploration and cohort identification of acute patient histories aggregated from heterogeneous sources. - Rune Saetre; Øystein Nytrø; Stein Jakob Nordbø; Aslak Steinsbekk (ICDE Workshops, 2016)

IDI$@$NTNU at SemEval-2016 Task 6: Detecting Stance in Tweets Using Shallow Features and GloVe Vectors for Word Representation. - Henrik Bøhler; Petter Asla; Erwin Marsi; Rune Sætre (SemEval@NAACL-HLT, 2016)

NTNU-1$@$ScienceIE at SemEval-2017 Task 10: Identifying and Labelling Keyphrases with Conditional Random Fields. - Erwin Marsi; Utpal Kumar Sikdar; Cristina Marco; Biswanath Barik; Rune Sætre (SemEval@ACL, 2017)

A Comprehensive Evaluation of Inductive Reasoning Capabilities and Problem Solving in Large Language Models. - Bowen Chen; Rune Sætre; Yusuke Miyao (EACL (Findings), 2024)