AccuVIR: an ACCUrate VIRal genome assembly tool for third-generation sequencing data. - Runzhou Yu; Dehan Cai; Yanni Sun (Bioinform., 2023)

HMMPolish: a coding region polishing tool for TGS-sequenced RNA viruses. - Runzhou Yu; Syed Muhammad Umer Abdullah; Yanni Sun (Briefings Bioinform., 2023)

Utilizing profile hidden Markov model databases for discovering viruses from metagenomic data: a comprehensive review. - Runzhou Yu; Ziyi Huang; Theo Y. C. Lam; Yanni Sun (Briefings Bioinform., 2024)