EnhancerDB: a resource of transcriptional regulation in the context of enhancers. - Ran Kang; Yiming Zhang 026; Qingqing Huang; Junhua Meng; Ruofan Ding; Yunjian Chang; Lili Xiong; Zhiyun Guo (Database J. Biol. Databases Curation, 2019)

Learning An End-to-End Structure for Retrieval in Large-Scale Recommendations. - Weihao Gao; Xiangjun Fan; Chong Wang 002; Jiankai Sun; Kai Jia; Wenzhi Xiao; Ruofan Ding; Xingyan Bin; Hui Yang; Xiaobing Liu (CIKM, 2021)

ipaQTL-atlas: an atlas of intronic polyadenylation quantitative trait loci across human tissues. - Xuelian Ma; Shumin Cheng; Ruofan Ding; Zhaozhao Zhao; Xudong Zou; Shouhong Guang; Qixuan Wang; Huan Jing; Chen Yu; Ting Ni; Lei Li 004 (Nucleic Acids Res., 2023)

xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs. - Ruofan Ding; Xudong Zou; Yangmei Qin; Lihai Gong; Hui Chen; Xuelian Ma; Shouhong Guang; Chen Yu; Gao Wang; Lei Li 004 (Briefings Bioinform., 2023)

eRNA-IDO: A One-stop Platform for Identification, Interactome Discovery, and Functional Annotation of Enhancer RNAs. - Yuwei Zhang; Lihai Gong; Ruofan Ding; Wenyan Chen; Hao Rong; Yanguo Li; Fawziya Shameem; Korakkandan Arshad Ali; Lei Li 004; Qi Liao (Genom. Proteom. Bioinform., 2024)

Nphos: Database and Predictor of Protein N-phosphorylation. - Ming-Xiao Zhao; Ruofan Ding; Qiang Chen; Junhua Meng; Fulai Li; Songsen Fu; Biling Huang; Yan Liu; Zhi-Liang Ji; Yufen Zhao (Genom. Proteom. Bioinform., 2024)