YHap: a population model for probabilistic assignment of Y haplogroups from re-sequencing data. - Fan Zhang 090; Ruoyan Chen; Dongbing Liu; Xiaotian Yao; Guoqing Li; Yabin Jin; Chang Yu; Yingrui Li; Lachlan James M. Coin (BMC Bioinform., 2013)

SRinversion: a tool for detecting short inversions by splitting and re-aligning poorly mapped and unmapped sequencing reads. - Ruoyan Chen; Yu-Lung Lau; Yan Zhang; Wanling Yang (Bioinform., 2016)

A new tool for detecting short inversions using next generation sequencing (NGS) data and a systematic comparison of different NGS platforms on detection sensitivities. - Ruoyan Chen (2017)

Machine Learning for Classification of Protein Helix Capping Motifs. - Sean Mullane; Ruoyan Chen; Sri Vaishnavi Vemulapalli; Eli J. Draizen; Ke Wang; Cameron Mura; Philip E. Bourne (CoRR, 2019)

ChartBlender: An Interactive System for Authoring and Synchronizing Visualization Charts in Video. - Yi He; Yuqi Liu; Chenpu Li; Ruoyan Chen; Chuer Chen; Shengqi Dang; Nan Cao 001 (CoRR, 2025)