Designing of putative siRNA against geminiviral suppressors of RNAi to develop geminivirus-resistant papaya crop. - Sangeeta Saxena; Rupesh K. Kesharwani; Vinayak Singh; Sarita Singh (Int. J. Bioinform. Res. Appl., 2013)

CBS-miRSeq: A comprehensive tool for accurate and extensive analyses of microRNA-sequencing data. - Rupesh K. Kesharwani; Mattia Chiesa; Riccardo Bellazzi; Gualtiero I. Colombo (Comput. Biol. Medicine, 2019)

Genome Informatics. - Anil K. Kesarwani; Ankit Malhotra; Anuj Srivastava; Guruprasad Ananda; Haitham Ashoor; Parveen Kumar; Rupesh K. Kesharwani; Vishal Kumar Sarsani; Yi Li; Joshy George; Krishna M. Karuturi (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)