RNASurface: fast and accurate detection of locally optimal potentially structured RNA segments. - Ruslan A. Soldatov; Svetlana V. Vinogradova; Andrey A. Mironov (Bioinform., 2014)

RNA velocity of single cells. - Gioele La Manno; Ruslan A. Soldatov; Amit Zeisel; Emelie Braun; Hannah Hochgerner; Viktor Petukhov; Katja Lidschreiber; Maria E. Kastriti; Peter Lönnerberg; Alessandro Furlan; Jean Fan; Lars E. Borm; et al. (Nat., 2018)

scFates: a scalable python package for advanced pseudotime and bifurcation analysis from single-cell data. - Louis Faure; Ruslan A. Soldatov; Peter V. Kharchenko; Igor Adameyko (Bioinform., 2023)