Probabilistic scoring measures for profile-profile comparison yield more accurate short seed alignments. - David Mittelman; Ruslan Sadreyev; Nick V. Grishin (Bioinform., 2003)

PCMA: fast and accurate multiple sequence alignment based on profile consistency. - Jimin Pei; Ruslan Sadreyev; Nick V. Grishin (Bioinform., 2003)

Quality of alignment comparison by COMPASS improves with inclusion of diverse confident homologs. - Ruslan Sadreyev; Nick V. Grishin (Bioinform., 2004)

Estimates of statistical significance for comparison of individual positions in multiple sequence alignments. - Ruslan Sadreyev; Nick V. Grishin (BMC Bioinform., 2004)

A comprehensive system for evaluation of remote sequence similarity detection. - Yuan Qi; Ruslan Sadreyev; Yong Wang 025; Bong-Hyun Kim; Nick V. Grishin (BMC Bioinform., 2007)

COMPASS server for remote homology inference. - Ruslan Sadreyev; Ming Tang; Bong-Hyun Kim; Nick V. Grishin (Nucleic Acids Res., 2007)

Analysis of CASP8 targets, predictions and assessment methods. - Shuoyong Shi; Jimin Pei; Ruslan Sadreyev; Lisa N. Kinch; Indraneel Majumdar; Jing Tong; Hua Cheng; Bong-Hyun Kim; Nick V. Grishin (Database J. Biol. Databases Curation, 2009)

Phenotypic categorization of genetic skin diseases reveals new relations between phenotypes, genes and pathways. - Ruslan Sadreyev; Jamison D. Feramisco; Hensin Tsao; Nick V. Grishin (Bioinform., 2009)

Structure similarity measure with penalty for close non-equivalent residues. - Ruslan Sadreyev; Shuoyong Shi; David Baker 001; Nick V. Grishin (Bioinform., 2009)

PROCAIN server for remote protein sequence similarity search. - Yong Wang 025; Ruslan Sadreyev; Nick V. Grishin (Bioinform., 2009)

Considering scores between unrelated proteins in the search database improves profile comparison. - Ruslan Sadreyev; Yong Wang 025; Nick V. Grishin (BMC Bioinform., 2009)

COMPASS server for homology detection: improved statistical accuracy, speed and functionality. - Ruslan Sadreyev; Ming Tang; Bong-Hyun Kim; Nick V. Grishin (Nucleic Acids Res., 2009)