Allostery in the dengue virus NS3 helicase: Insights into the NTPase cycle from molecular simulations. - Russell B. Davidson; Josie Hendrix; Brian J. Geiss; Martin McCullagh (PLoS Comput. Biol., 2018)

Modeling protein structures from predicted contacts with modern molecular dynamics potentials: accuracy, sensitivity, and refinement. - Russell B. Davidson; Mathialakan Thavappiragasam; T. Chad Effler; Jess Woods; Dwayne A. Elias; Jerry M. Parks; Ada Sedova (BCB, 2021)

Proteome-scale Deployment of Protein Structure Prediction Workflows on the Summit Supercomputer. - Mu Gao; Mark Coletti; Russell B. Davidson; Ryan Prout; Subil Abraham; Benjamín Hernández; Ada Sedova (IPDPS Workshops, 2022)

OpenMDlr: parallel, open-source tools for general protein structure modeling and refinement from pairwise distances. - Russell B. Davidson; Jess Woods; T. Chad Effler; Mathialakan Thavappiragasam; Julie C. Mitchell; Jerry M. Parks; Ada Sedova (Bioinform., 2022)

tinyIFD: A High-Throughput Binding Pose Refinement Workflow Through Induced-Fit Ligand Docking. - Darren J. Hsu; Russell B. Davidson; Ada Sedova; Jens Glaser (J. Chem. Inf. Model., 2023)

Predicted structural proteome of Sphagnum divinum and proteome-scale annotation. - Russell B. Davidson; Mark Coletti; Mu Gao; Bryan Piatkowski; Avinash Sreedasyam; Farhan Quadir; David J. Weston; Jeremy Schmutz; Jianlin Cheng; Jeffrey Skolnick; Jerry M. Parks; Ada Sedova (Bioinform., 2023)