Predictive Model for Yeast Protein Functions Using Modular Neural Approach. - Doosung Hwang; Farshad Fotouhi; Russell L. Finley Jr.; William I. Grosky (BIBE, 2003)

Combining Bayesian Networks and Decision Trees to Predict Drosophila melanogaster Protein-Protein Interactions. - Jingkai Yu; Farshad Fotouhi; Russell L. Finley Jr. (ICDE Workshops, 2005)

A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila. - Svetlana Pacifico; Guozhen Liu; Stephen Guest; Jodi R. Parrish; Farshad Fotouhi; Russell L. Finley Jr. (BMC Bioinform., 2006)

Automated Segmentation and Classification of High Throughput Yeast Assay Spots. - Kourosh Jafari-Khouzani; Hamid Soltanian-Zadeh; Farshad Fotouhi; Jodi R. Parrish; Russell L. Finley Jr. (IEEE Trans. Medical Imaging, 2007)

Combining multiple positive training sets to generate confidence scores for protein-protein interactions. - Jingkai Yu; Russell L. Finley Jr. (Bioinform., 2009)

A stochastic approach to candidate disease gene subnetwork extraction. - Mohammad Shafkat Amin; Anupam Bhattacharjee; Russell L. Finley Jr.; Hasan M. Jamil (SAC, 2010)

A protein network-guided screen for cell cycle regulators in Drosophila. - Stephen Guest; Jingkai Yu; Dongmei Liu; Julie A. Hines; Maria A. Kashat; Russell L. Finley Jr. (BMC Syst. Biol., 2011)

DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila. - Thilakam Murali; Svetlana Pacifico; Jingkai Yu; Stephen Guest; George G. Roberts III; Russell L. Finley Jr. (Nucleic Acids Res., 2011)

Top-k Similar Graph Matching Using TraM in Biological Networks. - Mohammad Shafkat Amin; Russell L. Finley Jr.; Hasan M. Jamil (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Integrating the interactome and the transcriptome of Drosophila. - Thilakam Murali; Svetlana Pacifico; Russell L. Finley Jr. (BMC Bioinform., 2014)