High-resolution magnetohydrodynamic equilibrium code for unity beta plasmas. - Pierre-Alexandre Gourdain; Jean-Noel G. Leboeuf; Russell Y. Neches (J. Comput. Phys., 2006)

khmer release v2.1: software for biological sequence analysis. - Daniel S. Standage; Ali yari; Lisa J. Cohen; Michael R. Crusoe; Tim Head; Luiz Irber; Shannon E. K. Joslin; N. B. Kingsley; Kevin D. Murray; Russell Y. Neches; Camille Scott; Ryan Shean; et al. (J. Open Source Softw., 2017)

SuchTree: Fast, thread-safe computations with phylogenetic trees. - Russell Y. Neches; Camille Scott (J. Open Source Softw., 2018)

IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses. - Simon Roux; David Páez-Espino; I-Min A. Chen; Krishna Palaniappan; Anna Ratner; Ken Chu; T. B. K. Reddy; Stephen Nayfach; Frederik Schulz; Lee Call; Russell Y. Neches; Tanja Woyke; et al. (Nucleic Acids Res., 2021)

IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata. - Antonio Pedro Camargo; Stephen Nayfach; I-Min A. Chen; Krishnaveni Palaniappan; Anna Ratner; Ken Chu; Stephan Ritter; T. B. K. Reddy; Supratim Mukherjee; Frederik Schulz; Lee Call; Russell Y. Neches; et al. (Nucleic Acids Res., 2023)