The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. - Toshiaki Katayama; Kazuharu Arakawa; Mitsuteru Nakao; Keiichiro Ono; Kiyoko F. Aoki-Kinoshita; Yasunori Yamamoto; Atsuko Yamaguchi; Shuichi Kawashima; Hong-Woo Chun; Jan Aerts; Bruno Aranda; Lord H. Barboza; et al. (J. Biomed. Semant., 2010)

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications. - Toshiaki Katayama; Mark D. Wilkinson; Rutger A. Vos; Takeshi Kawashima; Shuichi Kawashima; Mitsuteru Nakao; Yasunori Yamamoto; Hong-Woo Chun; Atsuko Yamaguchi; Shin Kawano; Jan Aerts; Kiyoko F. Aoki-Kinoshita; et al. (J. Biomed. Semant., 2011)

Bio: : Phylo - phyloinformatic analysis using Perl. - Rutger A. Vos; Jason Caravas; Klaas Hartmann; Mark A. Jensen; Chase A. Miller (BMC Bioinform., 2011)

Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics. - Raoul Jean Pierre Bonnal; Jan Aerts; George Githinji; Naohisa Goto; Daniel MacLean; Chase A. Miller; Hiroyuki Mishima; Massimiliano Pagani; Ricardo Ramirez-Gonzalez; Geert Smant; Francesco Strozzi; Rob Syme; et al. (Bioinform., 2012)

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. - Arlin Stoltzfus; Hilmar Lapp; Naim Matasci; Helena F. Deus; Brian Sidlauskas; Christian M. Zmasek; Gaurav Vaidya; Enrico Pontelli; Karen Cranston; Rutger A. Vos; Campbell O. Webb; Luke J. Harmon; et al. (BMC Bioinform., 2013)

The HTS barcode checker pipeline, a tool for automated detection of illegally traded species from high-throughput sequencing data. - Youri Lammers; Tamara Peelen; Rutger A. Vos; Barbara Gravendeel (BMC Bioinform., 2014)

The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants. - Robert Hoehndorf; Mona Alshahrani; Georgios V. Gkoutos; George Gosline; Quentin Groom; Thomas Hamann; Jens Kattge; Sylvia Mota de Oliveira; Marco Schmidt 003; Soraya Sierra; Erik Smets; Rutger A. Vos; et al. (J. Biomed. Semant., 2016)

Shō-coin: A Knowledge-Based Economy for Life Sciences. - Alexander García Castro; Erick Antezana; Jael García; Olga L. Giraldo; Pjotr Prins; Rutger A. Vos (SWAT4LS, 2017)

Community and Code: Nine Lessons from Nine NESCent Hackathons. - Arlin Stoltzfus; Michael S. Rosenberg; Hilmar Lapp; Aidan Budd; Karen Cranston; Enrico Pontelli; Shann Oliver; Rutger A. Vos (F1000Research, 2017)

restez: Create and Query a Local Copy of GenBank in R. - Dominic J. Bennett; Hannes Hettling; Daniele Silvestro; Rutger A. Vos; Alexandre Antonelli (J. Open Source Softw., 2018)

WGS2NCBI - Toolkit for preparing genomes for submission to NCBI. - Rutger A. Vos; Nnadi Nnaemeka Emmanuel; John Chinyere Aguiyi (J. Open Source Softw., 2019)

BioHackathon 2015: Semantics of data for life sciences and reproducible research. - Rutger A. Vos; Toshiaki Katayama; Hiroyuki Mishima; Shin Kawano; Shuichi Kawashima; Jin-Dong Kim; Yuki Moriya; Toshiaki Tokimatsu; Atsuko Yamaguchi; Yasunori Yamamoto; Hongyan Wu; Peter Amstutz; et al. (F1000Research, 2020)

outsider: Install and run programs, outside of R, inside of R. - Dominic J. Bennett; Hannes Hettling; Daniele Silvestro; Rutger A. Vos; Alexandre Antonelli (J. Open Source Softw., 2020)