The design of chromophore containing biomolecules. - Ruth Pachter; Zhiqiang Wang; James A. Lupo; Steven B. Fairchild; Brian Sennett (Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding, 1995)

Hybrid Genetic Algorithms for Minimization of a Polypeptide Specific Energy Model. - Laurence D. Merkle; Gary B. Lamont; George H. Gates Jr.; Ruth Pachter (International Conference on Evolutionary Computation, 1996)

Hybrid genetic algorithms for polypeptide energy minimization. - Laurence D. Merkle; Robert L. Gaulke; Gary B. Lamont; George H. Gates Jr.; Ruth Pachter (SAC, 1996)

Exogenous parameter selection in a real-valued genetic algorithm. - Charles E. Kaiser; Gary B. Lamont; Laurence D. Merkle; George H. Gates Jr.; Ruth Pachter (ICEC, 1997)

Case Studies in Protein Structure Prediction with Real-valued Genetic Algorithms. - Charles E. Kaiser; Laurence D. Merkle; Gary B. Lamont; George H. Gates Jr.; Ruth Pachter (PP, 1997)

Polypeptide structure prediction: real-value versus binary hybrid genetic algorithms. - Charles E. Kaiser; Gary B. Lamont; Laurence D. Merkle; George H. Gates Jr.; Ruth Pachter (SAC, 1997)

Prediction of peptide conformation: The adaptive simulated annealing approach. - Zhiqiang Wang; Ruth Pachter (J. Comput. Chem., 1997)

Large Scale Molecular Dynamics Simulations with Fast Multipole Implementations. - Zhiqiang Wang; James A. Lupo; Alan McKenney; Ruth Pachter (SC, 1999)

Improved QSARs for Predictive Toxicology of Halogenated Hydrocarbons. - Steven Trohalaki; Eric M. Gifford; Ruth Pachter (Comput. Chem., 2000)

New Materials Design. - Jerry A. Boatz; Mark S. Gordon; Gregory A. Voth; Sharon Hammes-Schiffer; Ruth Pachter (International Conference on Computational Science (1), 2001)

Linkage-learning genetic algorithm application to the protein structure prediction problem. - Karl R. Deerman; Gary B. Lamont; Ruth Pachter (SAC, 2001)

Analysis of fine granularity and building block sizes in the parallel fast messy GA. - Richard O. Day; Jesse B. Zydallis; Gary B. Lamont; Ruth Pachter (IEEE Congress on Evolutionary Computation, 2002)

Protein Structure Prediction by Applying an Evolutionary Algorithm. - Richard O. Day; Gary B. Lamont; Ruth Pachter (IPDPS, 2003)

Functionalization of Single-Wall Carbon Nanotubes: An Assessment of Computational Methods. - Brahim Akdim; Tapas Kar; Xiaofeng Duan; Ruth Pachter (International Conference on Computational Science, 2004)

Halogenated Aliphatic Toxicity QSARs Employing Metabolite Descriptors. - Steven Trohalaki; Ruth Pachter; Kevin T. Geiss; John M. Frazier (J. Chem. Inf. Model., 2004)

Effects of O3 Adsorption on the Emission Properties of Single-Wall Carbon Nanotubes: A Density Functional Theory Study. - Brahim Akdim; Tapas Kar; Donald A. Shiffler; Xiaofeng Duan; Ruth Pachter (International Conference on Computational Science (1), 2006)

A Density Functional Theory Study of Oxygen Adsorption at Silver Surfaces: Implications for Nanotoxicity. - Brahim Akdim; Saber Hussain; Ruth Pachter (ICCS (2), 2008)

Adaptive Simulated Annealing and its Application to Protein Folding. - Ruth Pachter; Zhiqiang Wang (Encyclopedia of Optimization, 2009)

A Density Functional Theory Investigation on the Properties of Supramolecular Catalysts for Photoinitiated Electron Collection. - Xiaofeng Duan; Ruth Pachter; Karen J. Brewer; Barry L. Farmer (ICCS, 2013)

Mechanistic Analysis of Oxygen Vacancy Driven Conductive Filament Formation in Resistive Random Access Memory Metal/NiO/Metal Structures. - Handan Yildirim; Ruth Pachter (DRC, 2018)

The effect of solvent on determining highest occupied molecular orbital energies of semiconducting organic molecules: Insight from a combined computational approach. - Aaron Kramer; Ruth Pachter; Julia W. P. Hsu; William G. Vandenberghe (J. Comput. Chem., 2023)