Beyond microarrays: Finding key transcription factors controlling signal transduction pathways. - Alexander E. Kel; Nico Voss; Ruy Jáuregui; Olga V. Kel-Margoulis; Edgar Wingender (BMC Bioinform., 2006)

Modelling the Molecular Interactions in the Flower Developmental Network of Arabidopsis thaliana. - Kerstin Kaufmann; Masao Nagasaki; Ruy Jáuregui (Silico Biol., 2010)

AromaDeg, a novel database for phylogenomics of aerobic bacterial degradation of aromatics. - Márcia Duarte; Ruy Jáuregui; Ramiro Vilchez-Vargas; Howard Junca; Dietmar H. Pieper (Database J. Biol. Databases Curation, 2014)

An entropy-reducing data representation approach for bioinformatic data. - Alan F. McCulloch; Ruy Jáuregui; Paul H. Maclean; Rachael L. Ashby; Roger A. Moraga; Aurélie Laugraud; Rüdiger Bräuning; Ken G. Dodds; John C. McEwan (Database J. Biol. Databases Curation, 2018)