Inferring Local Genealogies on Closely Related Genomes. - Ryan A. Leo Elworth; Luay Nakhleh (RECOMB-CG, 2017)

DGEN: A Test Statistic for Detection of General Introgression Scenarios. - Ryan A. Leo Elworth; Chabrielle Allen; Travis Benedict; Peter Dulworth; Luay Nakhleh (WABI, 2018)

ALPHA: a toolkit for Automated Local PHylogenomic Analyses. - Ryan A. Leo Elworth; Chabrielle Allen; Travis Benedict; Peter Dulworth; Luay Nakhleh (Bioinform., 2018)

SeqScreen: a biocuration platform for robust taxonomic and biological process characterization of nucleic acid sequences of interest. - Dreycey Albin; Pravin Muthu; Gene Godbold; Mikael Lindvall; Madeline Diep; Adam A. Porter; Mihai Pop; Krista Ternus; Todd J. Treangen; Dan Nasko; Ryan A. Leo Elworth; Jacob Lu; et al. (BIBM, 2019)

Faster Pan-Genome Construction for Efficient Differentiation of Naturally Occurring and Engineered Plasmids with Plaster. - Qi Wang 038; Ryan A. Leo Elworth; Tian Rui Liu 003; Todd J. Treangen (WABI, 2019)

Fast Processing and Querying of 170TB of Genomics Data via a Repeated And Merged BloOm Filter (RAMBO). - Gaurav Gupta; Minghao Yan; Benjamin Coleman; Bryce Kille; Ryan A. Leo Elworth; Tharun Medini; Todd J. Treangen; Anshumali Shrivastava (SIGMOD Conference, 2021)

One-Pass Diversified Sampling with Application to Terabyte-Scale Genomic Sequence Streams. - Benjamin Coleman; Benito Geordie; Li Chou; Ryan A. Leo Elworth; Todd J. Treangen; Anshumali Shrivastava (ICML, 2022)