ngsComposer: an automated pipeline for empirically based NGS data quality filtering. - Ryan D. Kuster; G. Craig Yencho; Bode A. Olukolu (Briefings Bioinform., 2021)

Readsynth: short-read simulation for consideration of composition-biases in reduced metagenome sequencing approaches. - Ryan D. Kuster; Margaret Staton (BMC Bioinform., 2024)