deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data. - Andrew W. McPherson; Fereydoun Hormozdiari; Abdalnasser Zayed; Ryan Giuliany; Gavin Ha; Mark G. F. Sun; Malachi Griffith; Alireza Heravi Moussavi; Janine Senz; Nataliya Melnyk; Marina Pacheco; Marco A. Marra; et al. (PLoS Comput. Biol., 2011)

JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data. - Andrew Roth; Jiarui Ding; Ryan D. Morin; Anamaria Crisan; Gavin Ha; Ryan Giuliany; Ali Bashashati; Martin Hirst; Gulisa Turashvili; Arusha Oloumi; Marco A. Marra; Sam Aparicio; et al. (Bioinform., 2012)